Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2200 ATGAGCAATTGGTTGGGGTTTTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGACCGTGGAGGTGGGGGAGGAGGAGGAGGAGGAGGCTATACTCATCCTCCTTCTCATCATCCTCACTTGTCTGTTATGCCTCTGCACTCTGATGGCTCTCTCTGTGCTGCTGACTCCTTTAGACACTCTGCTGCACCCCAAGAATGGAGATATGACAATGCAATAGGTGGAGGGAACTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTGGGTGGTTACTCAAACTCCCCACTTGCTGAGTCCAAAGTCTTTTGCCAAGGCACACAACATGACGAAAATCAGCACAGCAGTATCCCCAAAATCAATGTGAATGTTGCCCCAAGCTTTAGCACCAACAACACTGAGATTGAAACTGTGGACAGTCATCTCACAAACCCATCATCCTTGCTCCAATCTTTCCATGCATATAATGACAATAACCCACATGCCCTCATCCCCAGCAATGGCATGTACAAGTCATGGTTGGCACAAACCCAGTTTTCTGATGGGAAACCTTCAGCAGAGGCAAATGGGTGCGATTTCCAATCTCTGTCACTGACTATGAGCCCCAGTGTGCAAAATGGGGTGGGTGCAGCAGGTGCAATTTGCCCCGTTCAGGTGGATGATGACACCCGAAAACGGTCCTTGGCAAAATCTCAAGCTAGAGAACCTGTGCCTCGCAAATCTATTGATACTTTTGGGCAGAGAACGTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCTTCTGTGTATAGAGGCGTGACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGGATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGACGTGAAGAGGATTTGCTCAAGCTCAACTCTCATTGCTGGAGATCTTGCAAAACGGTCGCCGAAGGAATTGCCTCCGCCCTTAGCTGAGGACTTCAACTCGTGTGGCTCTACCACACCTTCTCAACCAGCTCCTTTGGCTATAACTAATGATGAACACTCTGATGAGTTATCCAACATTCTATGGAATGCTAACAGTGATGAGCAGCCACCAAATGAGAGCGGAAATGTCAACAATTGCACCAAATCATCGCCCCCGCATGTGGCATCAACCCACAAGAATGCATTGAGCCCTCAGAGCCCCAAGTGTTGTGTGGGGCTGCCAAATGAATTTGGAGTCAATGGAGCAGACTTTGGACATGGGTACTTCACCCTGCAGGGACAAAAATATGATGATGGAAACAATGAAAATGACCACATGAACCCCAACCGGCTTGGGAATTTGGGTTTGGTTAACCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1752 0.4658 MSNWLGFSLTPHLRIDEEFGRENQDRGGGGGGGGGGYTHPPSHHPHLSVMPLHSDGSLCAADSFRHSAAPQEWRYDNAIGGGNSNEEGPKLEDFLGGYSNSPLAESKVFCQGTQHDENQHSSIPKINVNVAPSFSTNNTEIETVDSHLTNPSSLLQSFHAYNDNNPHALIPSNGMYKSWLAQTQFSDGKPSAEANGCDFQSLSLTMSPSVQNGVGAAGAICPVQVDDDTRKRSLAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKELPPPLAEDFNSCGSTTPSQPAPLAITNDEHSDELSNILWNANSDEQPPNESGNVNNCTKSSPPHVASTHKNALSPQSPKCCVGLPNEFGVNGADFGHGYFTLQGQKYDDGNNENDHMNPNRLGNLGLVNQVPMFALWNE* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2200 583 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 443 - -
Dod06g2200 583 MobiDBLite consensus disorder prediction 484 516 - -
Dod06g2200 583 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 46 443 - -
Dod06g2200 583 ProSiteProfiles AP2/ERF domain profile. 359 417 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 ProSiteProfiles AP2/ERF domain profile. 257 323 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 SUPERFAMILY DNA-binding domain 256 325 IPR016177 GO:0003677
Dod06g2200 583 SUPERFAMILY DNA-binding domain 358 419 IPR016177 GO:0003677
Dod06g2200 583 Pfam AP2 domain 358 409 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 Pfam AP2 domain 257 315 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 CDD AP2 358 419 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 MobiDBLite consensus disorder prediction 21 51 - -
Dod06g2200 583 Gene3D AP2/ERF domain 359 419 IPR036955 GO:0003700|GO:0006355
Dod06g2200 583 Gene3D AP2/ERF domain 256 325 IPR036955 GO:0003700|GO:0006355
Dod06g2200 583 PRINTS Ethylene responsive element binding protein signature 399 419 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 SMART rav1_2 359 423 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 SMART rav1_2 257 329 IPR001471 GO:0003700|GO:0006355
Dod06g2200 583 MobiDBLite consensus disorder prediction 75 97 - -
Dod06g2200 583 CDD AP2 256 325 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2200 Dod-Chr6 46973890 46978432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2200 1 442 AP2-EREBP Transcription Factor Family AT1G72570 51.606 3.84e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod06g2200 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2200 K09285 - gmx:100805489 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2200 06 46973890 46978432 Dod06g2200 06 46973890 46978432 ECH