Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2196 ATGAAACTGAAAGTGATGAGTTACATGTCACAATGGAGAAGCCTCACAAAGGAAGCGCTGGACCGCACAGCCATCATAGCCAAGTTCCTCTGCTGGCTTCACTTCACCGACAACTACCTCTGCTCCCCGACACACGTAACCTATTCCCTCCCCCAACTCCAAAAAAGATACAAACTTTATGTGATTTTCAGATACCCATTTGACTCAATTGCACCCTGGAATTACCTAATTAACGTTTTGCAGGTGTACGGGCCCAGCATGCTCCCAACCCTAAACCTCGCCGGTGACGTCGTTTTGGCGGAGCACGTGTCTCAGCGGCTTGGGAAGGTTGGGCATGGCGACTTGGTTCTGGTTCGGTCACCCTCCGACCCTAACCGCTGCCTCACGAAGCGGATTGTGGCCATGGAAGGAGACACTGTCACTTACTTTGATCCTATGCGTGATGATGCCACTCAAATTGCAGTGGTGCCAAAGGGCCATGTTTGGATTCAAGGGGATAACATTTATGCATCACATGATTCACGGCATTTTGGTGCTGTTCCTTATGGCCTTATACAAGGAAAAGTGTTTTTTAGGGTTTGGCCTCTTGATACCTTTGGACTGCTAGGTCAATGA 615 0.4911 MKLKVMSYMSQWRSLTKEALDRTAIIAKFLCWLHFTDNYLCSPTHVTYSLPQLQKRYKLYVIFRYPFDSIAPWNYLINVLQVYGPSMLPTLNLAGDVVLAEHVSQRLGKVGHGDLVLVRSPSDPNRCLTKRIVAMEGDTVTYFDPMRDDATQIAVVPKGHVWIQGDNIYASHDSRHFGAVPYGLIQGKVFFRVWPLDTFGLLGQ* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2196 204 PRINTS Bacterial leader peptidase 1 (S26A) family signature 75 91 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod06g2196 204 PRINTS Bacterial leader peptidase 1 (S26A) family signature 128 140 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod06g2196 204 PRINTS Bacterial leader peptidase 1 (S26A) family signature 156 175 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod06g2196 204 CDD S26_SPase_I 79 189 IPR019533 GO:0004252|GO:0006465
Dod06g2196 204 SUPERFAMILY LexA/Signal peptidase 75 202 IPR036286 -
Dod06g2196 204 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 74 202 - -
Dod06g2196 204 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 8 47 - -
Dod06g2196 204 Pfam Signal peptidase, peptidase S26 145 194 IPR019533 GO:0004252|GO:0006465
Dod06g2196 204 Pfam Signal peptidase, peptidase S26 73 143 IPR019533 GO:0004252|GO:0006465
Dod06g2196 204 Gene3D Umud Fragment, subunit A 74 200 - -
Dod06g2196 204 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 74 202 - -
Dod06g2196 204 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 8 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2196 Dod-Chr6 46669202 46673818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2196 87 203 MADS-box Gene Family AT1G29960 51.695 1.52e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2196 K09647 - zju:107414309 233.417