Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2184 ATGCCGTCGGAAAAAATGAATCTCATCCCTTGGATACTGATAATTGGAGCATTGATTATAGCGTTTGCGTTTTTCAGTTTCACCATGCTTGGATGGTGCAACCATACAAGTGTCATGCCACCCCTTCCAGCAACAGGCGTATCTTTTGATGACAAGTACTCTGCTTGCTTAAGTTTAGAGTCACACTCAATTACATTCCAGTATAAGGCAGAATTAGGTGCTGCTGCTGCTGAAGGGGCAAACCAGACTCTGTGTGTTATCTGCTTGACGCCTTTTGAAGAAGAGGAGAATGTCCGGAAGCTTCACAGCTGCAAACACATATTCCACACATCTTGCATCGATAAGTGGCTTGGCTCTCATTCTGGATGCCCCTTGTGCCGCAGTCAGATTGACAAAGTGGCTTCTCCAAATGGGACAGTGCGTTCGGAAGAAAATAGTCAGATGATCTTCGTCAATGTTAACCCCTGA 468 0.453 MPSEKMNLIPWILIIGALIIAFAFFSFTMLGWCNHTSVMPPLPATGVSFDDKYSACLSLESHSITFQYKAELGAAAAEGANQTLCVICLTPFEEEENVRKLHSCKHIFHTSCIDKWLGSHSGCPLCRSQIDKVASPNGTVRSEENSQMIFVNVNP* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2184 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Dod06g2184 155 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Dod06g2184 155 SMART ring_2 85 126 IPR001841 -
Dod06g2184 155 SUPERFAMILY RING/U-box 83 133 - -
Dod06g2184 155 Pfam Ring finger domain 85 127 IPR001841 -
Dod06g2184 155 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 51 146 - -
Dod06g2184 155 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 51 146 IPR044675 -
Dod06g2184 155 CDD RING-H2_EL5_like 85 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2184 Dod-Chr6 46226480 46227419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2184 85 155 Rapid Response to Elicitors AT3G16720 45.070 4.77e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2184 - - gmx:102661636 198.364