Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2164 ATGATGGCAGAGGAAAGTTGTGGGTTTATGGAAGAAACACAAACCTTGAAGATGAAGAGAGAGGAGGAGGAAGAAGAAGAAGAAAAGGAGGAGATGAGTCGCAAGGAGAAGCGGAAGGCAATAAAGAAGGTGAAGCGGAAGCATGTGAGGAAGGAGATGGCGGTGAAGGAGCGGGTGGATGAGGAGGCACGCCTCAATGATCCAGATGAGCAGAGGAGGATGCAGCTGCTGGAGCAGCAAGAGGCTGAGAGGATGGAGAGGGACAGGATCCTCTTTCAGGAGAGAGAGAGGGCCTGGATGATGAGCCTTGAGTCGCAGCAGAGCACGACGACCATCCACCATCAGCAGCAATCACAACAGAGGAACCTTCTCGAAGAATCAGAGTCAGCGCCCAACGATGATGACCACGATCAATGGGAATATGTGGAGGATGGGCCTCCTCAGATTATCTGGCAAGGAAACGAGATCATTTTCAAAAGGAACAAAGTGAGGGTTAGGGTTTCAAACAAGCAACCAAATCAACACCAACACCAGCTGCTGGATGCTGATGATAATAGACCTACATCAAATCCTTTTCCCCCAGAATCTGACACAAATTCGTCCACTCAGCAGGCGCTTGAGAACGTTGCTCAACAAGTACCCAATTTCGGAACTGAACAGGACAAAGCTCATTGTCCTTTTCATCTAAAGACGGGAGTGTGTCGATTTGGCCAACGTTGTAGCAGAGTCCACTTTTACCCTGATAAGTCATGCACCCTTCTTATAAAAAACATGTACAACGGTCCAGGCCTTGCTTGGGAGCAAGATGAAGGCCTTGAGTATACGGATGAGGAGGTTGAACGCTGTTTTGAAGAATTTTATGAGGATGTTCATACAGAGTTCCTGAAGTTTGGGGAAATTGCTAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTACGTGCAGTATAAATTTTTGGATTCTGCTCTGCTTGCTTATAACTCAGTTAATGGTCGCTACTTTGCAGGGAAACAGGTAAGTTGTAACTTTGTCAATTTGACAAGATGGAAGGTTGCAATATGTGGTGAATATATGAAGTCAGGTTTCAAGACTTGTTCCCATGGAACAACTTGCAACTTCATACACTGTTTTCGGAATCCTGGTGGAGACTATGAATGGGCTGATTCTGATAGACCACCCCCAAAATATTGGGTGGAAAAAATGGTTGCTTTATTTGGTTATTCTGATGATTATGAGTCTTTAAGGGATCAAGAAAATTTGAGTGTGCTGAAGAACACTAGAAAGCTACCGAAAACAGATTCAGACAGGTACCACTCAAGTAGATCAAGATCTAGGGAGACGGATCAGTTAAGCCGTTTTTCTGGTACAAGAAAACACGGAGATGAAAGAAAGCAAAGAACTTCTAATGAGGAATCGAGTGCAAATTTAAAAGATAATCATAAATGA 1461 0.4422 MMAEESCGFMEETQTLKMKREEEEEEEEKEEMSRKEKRKAIKKVKRKHVRKEMAVKERVDEEARLNDPDEQRRMQLLEQQEAERMERDRILFQERERAWMMSLESQQSTTTIHHQQQSQQRNLLEESESAPNDDDHDQWEYVEDGPPQIIWQGNEIIFKRNKVRVRVSNKQPNQHQHQLLDADDNRPTSNPFPPESDTNSSTQQALENVAQQVPNFGTEQDKAHCPFHLKTGVCRFGQRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIANFKVCKNGSFHLRGNVYVQYKFLDSALLAYNSVNGRYFAGKQVSCNFVNLTRWKVAICGEYMKSGFKTCSHGTTCNFIHCFRNPGGDYEWADSDRPPPKYWVEKMVALFGYSDDYESLRDQENLSVLKNTRKLPKTDSDRYHSSRSRSRETDQLSRFSGTRKHGDERKQRTSNEESSANLKDNHK* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2164 486 MobiDBLite consensus disorder prediction 1 72 - -
Dod06g2164 486 Gene3D - 250 349 IPR012677 -
Dod06g2164 486 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 34 481 - -
Dod06g2164 486 MobiDBLite consensus disorder prediction 53 72 - -
Dod06g2164 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 382 IPR000571 GO:0046872
Dod06g2164 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 244 IPR000571 GO:0046872
Dod06g2164 486 MobiDBLite consensus disorder prediction 430 486 - -
Dod06g2164 486 MobiDBLite consensus disorder prediction 433 486 - -
Dod06g2164 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 351 IPR000504 GO:0003723
Dod06g2164 486 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 34 481 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dod06g2164 486 ProSiteProfiles Zinc finger C3H1-type profile. 353 383 IPR000571 GO:0046872
Dod06g2164 486 MobiDBLite consensus disorder prediction 104 126 - -
Dod06g2164 486 PRINTS U2 auxiliary factor small subunit signature 280 295 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dod06g2164 486 PRINTS U2 auxiliary factor small subunit signature 308 330 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dod06g2164 486 PRINTS U2 auxiliary factor small subunit signature 335 359 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dod06g2164 486 PRINTS U2 auxiliary factor small subunit signature 225 244 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dod06g2164 486 PRINTS U2 auxiliary factor small subunit signature 373 385 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dod06g2164 486 PRINTS U2 auxiliary factor small subunit signature 244 264 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dod06g2164 486 SUPERFAMILY RNA-binding domain, RBD 283 351 IPR035979 GO:0003676
Dod06g2164 486 MobiDBLite consensus disorder prediction 104 141 - -
Dod06g2164 486 SMART c3hfinal6 353 382 IPR000571 GO:0046872
Dod06g2164 486 SMART c3hfinal6 220 246 IPR000571 GO:0046872
Dod06g2164 486 Coils Coil 10 40 - -
Dod06g2164 486 SMART rrm2_1 281 347 IPR003954 GO:0003676
Dod06g2164 486 MobiDBLite consensus disorder prediction 168 203 - -
Dod06g2164 486 MobiDBLite consensus disorder prediction 38 52 - -
Dod06g2164 486 CDD RRM_U2AFBPL 252 350 - -
Dod06g2164 486 MobiDBLite consensus disorder prediction 183 203 - -
Dod06g2164 486 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod06g2164 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2164 K24273 - gmx:100789091 596.275