Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2157 ATGGACACTATGCACTCTGTTCTCAAGCAATATTTCGGGTTTTCAGATTTTCGGCCTTATCAGAAAGAAGTTATTGAGAAAATTGTTGAGAAAAGGGATTGCTTGGTAGTCACGGCCACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTGCCACCCTTGGTTGTTAGAAAGACTGGGATAGTTGTTAGCCCTCTCATATCATTGATGCAAGATCAGGTAATGGCTTTGAAACAGCGGGGAATCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATCCCACAGTTCAGACAAAAGCTGAGCATGGTCAATTTGACATTTTGTTCATGACTCCTGAGAAGGCTTGTGCAGTTCCTATCAGTTTCTGGTCCAACTTGCTGAAGGAAGGAATCAGTCTTTTTGCCATTGATGAAGCACATTGTATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGAAGTTAGACAACTTGCGTGGTGTTCTGTTAGATGTTCCTTTTGTTGGTTTAACTGCGACTGCTACTGAAAAAGTTCGGTCTGACATCATCAGTTCCCTAAAGATGATGAATCCATATGTTTTGGTTGGTTCATTTGATCGCTCCAATCTTTTCTATGGTGTCAAGACATTAAAACGTGGTCAATCTTCTATTGATGAGCTTGTGCAAGAAATTTCAAAAGACGTTGCTAATGTTGGCTCAACTATAATTTACTGCACAACAATAAAAGATGTAGAGCAGATATCGAAGTCACTTGCAGAAGCAGGTATTAAGGCTGGAATGTACCATGGCCAAATGGATAAAATATCCCGTGAGGAGTCTCATAGATTATTTGTCAGAGATGAACTGCACATCATGGTGGCTACAATTGCTTTTGGCATGGGTATAGATAAGCCTAACATAAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTTGAGTCGTACTACCAGGAAAGTGGACGGTGTGGAAGAGATGGTATTGCTTCTGTTTGTTGGCTTTATTACACAAGAAGTGACTTTGCAAAGGGTGACTTCTATTGTGGAGAGTTAAAAACAGAAACCCAACGAAGAGCTGTCATGGAGTCATTGATGGCTGCTGAACGCTATTGTGTGCTTGCAACTTGCAGAAGAAAGTACTTGCTTGAATACTTTGGGGAAAATTTTCCAGCTGATAGATGTGGGAACTGTGATAACTGCAGAGTCTCAAAGAAGCAGCGCGACATGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCGTGCAGGGGCAGATGGGGTCTTAATATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAACTTCCACTTCATGGTCTTGGAAAAACATACCCATCAAATTGGTGGAAAGCACTCGGACATCAATTGATTTCTCATGGTTACTTGAAGGAGACAGTCAGTGATCTGTACAGAACTATAAGTGTCAGTTCAATAGGAGAGCAATTTTTGGCCTCTTCTACACCGGATCATCAACCTCCCTTAGTTTTGATATTGACTGCTGAAATGCTTGGAGAAGAGGAAAATATAAGCACCCAAGAAGAATTCAAAACTTTAGCTGCTTCAGAATTAAAGGGTTTTACGGAGGCTGAGCGGCAGCTTTACCAAATGCTTTTAGAAGAAAGATTAAAGCTTGCGAGAAGTGTTGGAACAGCTCCATATGCCCTATGTGGTGATCAAACGATCAAGAGAATTTCTCTTACAAGACCATCGACAAAAGCAAGGCTAGCAAACATTGATGGTGTTAATCAGCACCTAGTAACAAAATATGGAGATCATTTTCTTGAAGTTATCAAGAAACTGTCACAAGGATTAAACTTATCATTGGATGGGGAAGCTGGTTTACAAGATAATGTAGTAAGGAAATTATCTCAAGTAACGAACAATTCAAGGAAGTTGACTCCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTTTTCAGGTAGGTCTGCTCCTATAAAGGAGCAAACTGTTGCTGAATATCTTTTGGAAGCTGCACAAGAAGGATTACCTTTTGATTGGAGCAGATTCAGTGAGATGATAGGACTGACACAAGAGATCAAATCAGAGATTCAGGGTGCTATTTCAAAGGTTGGATCTGCAGATAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAAATATAACTTATACACAGATCAAGACTTATTTGGCAATGCGAGACTCTGGAATATCCTCAGATGACAGTCAACTCGAAGGTCACCATACTGCGAAAGACAGTGAGCTACTAAATAATGAATCAGAAATGTGCCATGTGGAAAGGCATTGTGAAGCTAACATATCCGCTCAAAGTTTGATGGAAACTTGTGACTTAGAAATCAATAAAGAAGTGCCATCTGGACCTGTCAACGGTTGCCAGGTGCAGAAGCTTCCATTAGCGTCTGAATCGGAATTCACTAGAAAACGTCAGAAAGTTGGTAACACGGAGGAAACAAATTCAACTAAATTGAAGGCTACTGAGAGTTCTATAGTAGAGTGGCTGAAGAACCTTGATGAAGGGGCTACTTTGATTGGAATTCTGGAGCATTTCAATGGGTCTAGTGAAGATTCCGTGGTTGAACTGTTGAATTGCCTTGAGGCTGACTTCTCAATATTTAAGAAAGGTGGCATGTATAGGGTCATGTAA 2724 0.4075 MDTMHSVLKQYFGFSDFRPYQKEVIEKIVEKRDCLVVTATGSGKSLCYQVPPLVVRKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDPTVQTKAEHGQFDILFMTPEKACAVPISFWSNLLKEGISLFAIDEAHCISEWGHDFRVEYKKLDNLRGVLLDVPFVGLTATATEKVRSDIISSLKMMNPYVLVGSFDRSNLFYGVKTLKRGQSSIDELVQEISKDVANVGSTIIYCTTIKDVEQISKSLAEAGIKAGMYHGQMDKISREESHRLFVRDELHIMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGELKTETQRRAVMESLMAAERYCVLATCRRKYLLEYFGENFPADRCGNCDNCRVSKKQRDMSREAFLLMACIHSCRGRWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKTYPSNWWKALGHQLISHGYLKETVSDLYRTISVSSIGEQFLASSTPDHQPPLVLILTAEMLGEEENISTQEEFKTLAASELKGFTEAERQLYQMLLEERLKLARSVGTAPYALCGDQTIKRISLTRPSTKARLANIDGVNQHLVTKYGDHFLEVIKKLSQGLNLSLDGEAGLQDNVVRKLSQVTNNSRKLTPAKFEAWKMWHEDGLSIQMIANFSGRSAPIKEQTVAEYLLEAAQEGLPFDWSRFSEMIGLTQEIKSEIQGAISKVGSADKLKPIKNELPENITYTQIKTYLAMRDSGISSDDSQLEGHHTAKDSELLNNESEMCHVERHCEANISAQSLMETCDLEINKEVPSGPVNGCQVQKLPLASESEFTRKRQKVGNTEETNSTKLKATESSIVEWLKNLDEGATLIGILEHFNGSSEDSVVELLNCLEADFSIFKKGGMYRVM* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2157 907 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Dod06g2157 907 Gene3D - 1 198 IPR027417 -
Dod06g2157 907 ProSiteProfiles HRDC domain profile. 543 623 IPR002121 GO:0003676
Dod06g2157 907 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 4 742 - -
Dod06g2157 907 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 458 IPR004589 GO:0004386|GO:0006310
Dod06g2157 907 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 742 - -
Dod06g2157 907 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dod06g2157 907 SUPERFAMILY HRDC-like 543 618 IPR010997 GO:0000166|GO:0044237
Dod06g2157 907 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Dod06g2157 907 Gene3D HRDC domain 542 625 IPR044876 -
Dod06g2157 907 Gene3D - 402 527 IPR036388 -
Dod06g2157 907 Pfam RecQ zinc-binding 350 400 IPR032284 -
Dod06g2157 907 Pfam HRDC domain 547 613 IPR002121 GO:0003676
Dod06g2157 907 SMART hrdc7 543 623 IPR002121 GO:0003676
Dod06g2157 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 340 IPR027417 -
Dod06g2157 907 Pfam RQC domain 403 500 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dod06g2157 907 SMART ultradead3 13 208 IPR014001 -
Dod06g2157 907 SMART helicmild6 245 326 IPR001650 -
Dod06g2157 907 CDD DEXHc_RecQ 5 199 - -
Dod06g2157 907 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 371 IPR001650 -
Dod06g2157 907 CDD SF2_C_RecQ 200 335 - -
Dod06g2157 907 Pfam Helix-turn-helix domain 654 750 IPR029491 -
Dod06g2157 907 Gene3D - 200 401 IPR027417 -
Dod06g2157 907 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Dod06g2157 907 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2157 Dod-Chr6 45038367 45062482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2157 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 21.676 5.92e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2157 K03654 - gmx:100797777 1484.54