Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2150 ATGGACTCGCGAGCACAGTATAATCCCCGCACCGTGGAGGAGGTTTTCAGGGATTTCAAGGGCCGACGAGCTGGTCTCATCAAAGCCCTCACTACCGATGTTGAAGAATTCTACAATCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTACGGCTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTTCTGGGCATCAACTTTGCTAGGGATGGTATGCAAGAAAAGGACTGGTTATCTTTGGTTGCTGTTCACAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGATTTGATAAGGCTGACAGGAAGCGCCTTTTCAATATGATTAATGAACTGCCAACAATATTTGAAGTTGTTACTGGCGCAGCAAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTTAAACCACAGTGGCAGCAAGTCGAAGTCCAGCTCTAAATCACGAGCTCCAGAATCTCAGGGTAGACAGTCAAAGGCATTGCAAGCAAAGGACGAGGATGAAGAACTGGATGAGCAAGAAGATGAAGAACATGGAGAGACCTTGTGTGGGGCATGCGGGGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAATGCCCATCATGCAGCAACAAGAGAGCTCGCCCCTGA 762 0.4646 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVLNHSGSKSKSSSKSRAPESQGRQSKALQAKDEDEELDEQEDEEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2150 253 Pfam PHD-finger 200 249 IPR019787 -
Dod06g2150 253 MobiDBLite consensus disorder prediction 150 175 - -
Dod06g2150 253 CDD PHD_AL_plant 199 249 IPR044104 -
Dod06g2150 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Dod06g2150 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Dod06g2150 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Dod06g2150 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Dod06g2150 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Dod06g2150 253 MobiDBLite consensus disorder prediction 147 191 - -
Dod06g2150 253 SMART PHD_3 199 247 IPR001965 -
Dod06g2150 253 PANTHER CPG BINDING PROTEIN 6 253 IPR045104 GO:0006355|GO:0042393
Dod06g2150 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 253 - -
Dod06g2150 253 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2150 Dod-Chr6 44800671 44805062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2150 5 252 Alfin-like Transcription Factor Family AT3G42790 76.210 1.52e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dod06g2150 Alfin 2.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2150 - - gmx:100170700 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2150 06 44800671 44805062 Dod10g1855 10 39987375 39991750 ECH
Dod06g2150 06 44800671 44805062 Dod06g2150 06 44800671 44805062 ECH
Dod10g1855 10 39987375 39991750 Dod06g2150 06 44800671 44805062 PCT