Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2032 ATGGGTTCTCCTCCTCCCTTATCACTAACCGTCGTCGGATCAGACACCATCACGACAGTTTCTAGTTCAGGCACACCACCACCTCGCCGTTCATCTCCGTTACAGAACCTGAGCCCGAGCATCCTCATCATCGTAACGGTGCTAGCCGTCACCGTCATCGTATCCCTCGCCCTCTGCTTCCTCCTCCGCCACCTCAATCGCCGCTGCCTCCGCCGTCTCTCCCCTTCCTCCGCCGCCCCCTCTGCCGGCACAACGCCAATCTTTACCTCCAGCCGCCGCATCTCGCCGGAACTTCCTCAGAACTCTTCGTCCTCCGCTTTTATCATAGACTCCCTCCCGCTGTTCACCTTCTCCTCTGTCACCCGCCGATCCGCCGTCGCCGCCGACTGCGCAGTCTGCCTCTCGAAGTTCCGCCACGACGACCAGCTCCGCCTCCTCCCACTCTGCTGCCACGCCTTCCACGCCGAATGCATCGACACCTGGCTTCAATCCAACCTCTCCTGCCCCCTCTGCAGATCCGCCATTGTCACCGCCGAATCGGACCTTGCCAAACTTTTCCGGCCATCCTCCGCCGCCGGCACTGACAGTTTCCGCCTCGAGATAGGGAACGTGAGCCGCCGCGGAACAGCGCAGCATGACGCCGCCGCCGCAATTTCTGGCGAATCCGGCGGCGGCGCGAGGTCCAGGTCCTACTCCATTGGATCGTTCGAGTACTTTGTGGACGAGGAATCGGAGGTTCCGTTCAGCCACGCTCACCGGAGAAGTGCCTCCGATCAGAAGGACCTTCCGGCGCCGACGGAGACCCTGGCGGGTCAGCAGGAAGCGAACCTCGCTGGCGAGGTTGGCGGCGTGAGGAGCTGGCTGAAGGAGTACGTGGATAGGATCTCTGCTTCCATATCATCGCGAACGGCGTCGTTTCGGAGCTCTGGGAGGTTCTTCAGTGGTGCTGGGAGTAGTCGCCGAAGCGACGCCGTTCCTGTCTGTCCAGATTATGACATTGAAGGTAACCGAATTGGTGAGGAGATCACTGAAATGTTTCGTTGGCTCTCAGGGGTATGA 1059 0.6072 MGSPPPLSLTVVGSDTITTVSSSGTPPPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRLSPSSAAPSAGTTPIFTSSRRISPELPQNSSSSAFIIDSLPLFTFSSVTRRSAVAADCAVCLSKFRHDDQLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIVTAESDLAKLFRPSSAAGTDSFRLEIGNVSRRGTAQHDAAAAISGESGGGARSRSYSIGSFEYFVDEESEVPFSHAHRRSASDQKDLPAPTETLAGQQEANLAGEVGGVRSWLKEYVDRISASISSRTASFRSSGRFFSGAGSSRRSDAVPVCPDYDIEGNRIGEEITEMFRWLSGV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2032 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 321 - -
Dod06g2032 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 4 321 - -
Dod06g2032 352 Pfam Ring finger domain 129 172 IPR001841 -
Dod06g2032 352 CDD mRING-H2-C3H2C2D_ZSWM2 130 172 - -
Dod06g2032 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 177 IPR013083 -
Dod06g2032 352 MobiDBLite consensus disorder prediction 77 96 - -
Dod06g2032 352 MobiDBLite consensus disorder prediction 75 96 - -
Dod06g2032 352 SUPERFAMILY RING/U-box 107 178 - -
Dod06g2032 352 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Dod06g2032 352 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2032 Dod-Chr6 33568818 33570051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2032 108 300 C3H Transcription Factor Family AT2G18650 28.745 4.63e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2032 K10663 - gmx:100817751 425.631