Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2025 ATGGTCATCTATGGTGCCTTGTGTGAAGCTGCCACCACCGGATGGTGCCCGTCTAGCAACAACACTGTGAGCAACGTCAATAGTACAGTGAAAATGGAAATTGAGGATCAAATTGGTGGCACACGTGGGGTTCTGGTGTCGCCTAGGAGAGGGAGGGGCTACAACGAGGTGCGGAGGAGGCTATGGGGGAAATATGCTGCGGAGATAAGAAGCCCTAATAGGAACGACATTAGGGTTTGGCTTGGAACTTATGAGACTGCCGAGGATACGGCTTTGGCTTATGACCAAGCTGCCTTCAAGATGCGCAGCTCAAAAGCTAAGCTGAATTTCCCTTATTTGATTGGGTCAGATCATGAAGAGGTGGTAAGGGTTACGCTCAAGCGACGCTTGCTAGAGATGCCTTTTTTGCTATGCCATTCTTATTCTTTAGATTATAACAGTGCTGACGAATGGAGAAAGAATGTTGGCTGGGGCACGAAGGCGGCTTTGGAGATAGGTAACACAAATATGTGGCAATTTTCCATTGATAATTCTTGGTGA 540 0.4759 MVIYGALCEAATTGWCPSSNNTVSNVNSTVKMEIEDQIGGTRGVLVSPRRGRGYNEVRRRLWGKYAAEIRSPNRNDIRVWLGTYETAEDTALAYDQAAFKMRSSKAKLNFPYLIGSDHEEVVRVTLKRRLLEMPFLLCHSYSLDYNSADEWRKNVGWGTKAALEIGNTNMWQFSIDNSW* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2025 179 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Dod06g2025 179 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Dod06g2025 179 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Dod06g2025 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 31 117 - -
Dod06g2025 179 PANTHER DNA-BINDING DOMAIN 31 117 IPR044808 GO:0003700|GO:0009873
Dod06g2025 179 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Dod06g2025 179 CDD AP2 54 113 IPR001471 GO:0003700|GO:0006355
Dod06g2025 179 SMART rav1_2 53 117 IPR001471 GO:0003700|GO:0006355
Dod06g2025 179 Pfam AP2 domain 57 103 IPR001471 GO:0003700|GO:0006355
Dod06g2025 179 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2025 Dod-Chr6 32981560 32982099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2025 1 132 AP2-EREBP Transcription Factor Family AT2G44840 50.746 1.22e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod06g2025 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2025 K09286 - gmx:100804762 161.384