Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2012 ATGTTCCGCCGAGCAACAGCCCTTCTCCGGCGACCCCTTCTCGGCGCGGCGTCCCGCCGATTATCCACCGATCTGCCGGCGGCACCCAGCGCAGATTCGAGCTTCGTGGAGGCATGGAAGAAAGTGAGCCCGAACCTGGACCCTCCAAAGACTCCCATGGCCTACATGAAGCCTCGGCCCCCTACTCCCTCTTCCCTCCCTACCAAACTTACCGTCAACTTTGTCCTTCCTTACGCCTCCGAACTCTCCGCCAAAGAGGTTGACATGGTCATAGTACCTGCAACAACTGGGCAGATGGGTGTTCTCCCTGGACATGTAGCCACAATTGCAGAGTTGAAACCCGGCATCCTATCTGTACATGAGGGGAATGATGTGACCAAGTATTTTGTCAGCAGCGGCTTTGCATTCATCCATGCAAACTCAGTTGCGGATATAATAGCTGTTGAGGCTGTTCCGCTGGATCAAATTGATGCAAATCTAGTCCAGAAGGGTCTTCAAGAGTTCACTCAGAAGCTGAGCTCAGCCACAACTGATTTGGAGAAAGCTGAGGCTCAGATTGGGGTTGACGTCCATAGTGCTCTCAACTCAGCTCTTTCGGGCTAA 603 0.5357 MFRRATALLRRPLLGAASRRLSTDLPAAPSADSSFVEAWKKVSPNLDPPKTPMAYMKPRPPTPSSLPTKLTVNFVLPYASELSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGILSVHEGNDVTKYFVSSGFAFIHANSVADIIAVEAVPLDQIDANLVQKGLQEFTQKLSSATTDLEKAEAQIGVDVHSALNSALSG* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2012 200 Gene3D - 60 156 IPR036771 -
Dod06g2012 200 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 70 151 IPR036771 -
Dod06g2012 200 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 82 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dod06g2012 200 PANTHER ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL 1 200 - -
Dod06g2012 200 CDD F1-ATPase_delta 70 193 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dod06g2012 200 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 70 142 IPR020546 GO:0015986
Dod06g2012 200 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 1 200 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dod06g2012 200 Coils Coil 165 185 - -
Dod06g2012 200 Hamap ATP synthase epsilon chain [atpC]. 68 188 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dod06g2012 200 Gene3D - 157 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2012 Dod-Chr6 32427632 32437145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2012 1 200 Primary Pumps ATPases AT5G47030 74.634 2.59e-110 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2012 K02134 - gmx:100799603 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2012 06 32427632 32437145 Dod06g2012 06 32427632 32437145 ECH