Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2008 ATGGTCGTTCTGCAATTAGAAGCAGATGGTGTTAAACTTGAAGTCGCTCTCTTTGGTCAATTTGTTTACGAAGTTCGTAACTTTGTTGCAAAAAGTGAGGGAGTAATGCCGGTTGTCATTATCCAATTTGCCAAAGTTAAGACATTCAAGGGTAAAATAGTCATACAGAATGTCATGTTCGGGACCAGGTTGCTTTTTGAGCCAAATATTCCTGAGATTGTCAGCTTCAAAGCCAGACTTCCTACTCTTACTGGTGAGAGCTCTCAATCATTGTCTCTGCTAAGTGATGGTCCAACATATTCATTGGAGCATGACTTCCTCAATGTAACACCTAGGATCTTAATCCATGATCTTAGAGATTGTAATCAGGATGGGTTGTTTGTTGTTCATGGTATCATTTCTGGTGTCAATACCAGTGTTGATTGGTGGTACATTGCATGTAAATGCAACAAAGCTGTAAAACCAGATTCAGGGATGTATTATTGTGAGCGATGTTTTCGCCATGTTGTTAATGTGACTCCAAGATATAGGATTAAGATCCATGTGACTGATGAATCTGGAACAGCTGATTTTGTCATTTTTGATCGTGAAGGTCAACTGCTTATTGGAAAACCATGTTCTGAATTATGTGAACTCACTCACAAAGTATGTCTTATTTTATGTACATTCTGA 672 0.3839 MVVLQLEADGVKLEVALFGQFVYEVRNFVAKSEGVMPVVIIQFAKVKTFKGKIVIQNVMFGTRLLFEPNIPEIVSFKARLPTLTGESSQSLSLLSDGPTYSLEHDFLNVTPRILIHDLRDCNQDGLFVVHGIISGVNTSVDWWYIACKCNKAVKPDSGMYYCERCFRHVVNVTPRYRIKIHVTDESGTADFVIFDREGQLLIGKPCSELCELTHKVCLILCTF* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2008 223 SUPERFAMILY Nucleic acid-binding proteins 10 81 IPR012340 -
Dod06g2008 223 Gene3D - 2 88 IPR012340 -
Dod06g2008 223 PANTHER REPLICATION FACTOR A 1, RFA1 5 210 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod06g2008 223 CDD RPA1_DBD_B_like 8 81 - -
Dod06g2008 223 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 5 210 - -
Dod06g2008 223 CDD RPA1_DBD_C 127 212 IPR013955 -
Dod06g2008 223 Gene3D - 107 216 IPR012340 -
Dod06g2008 223 SUPERFAMILY Nucleic acid-binding proteins 111 214 IPR012340 -
Dod06g2008 223 Pfam Replication factor-A C terminal domain 127 213 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2008 Dod-Chr6 32206266 32208670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2008 37 212 Core DNA Replication Machinery Family AT5G08020 27.027 6.14e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2008 - - vun:114187234 193.356