Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2002 ATGCTGGCAACGAGTTACCCGTCGCAGGTGTTTCGCGGCGTTCACTTCGCTCTCTTTGGTTTCACTCCCATCACCGAAAGCAAGGTCCGGTTCAAGCTCGTGAACGGCGGTGCAGTCGATGTGGGCCAGTACAATGCGAATTGCACGCACGTCATTGTCGACGAGATTGCTTATGATGATCCTGTGTGCGTTGCTGCCAGAAACGATGGGAAGACGCTCGTCACGTCATTGTGGGTTGACCACAGCGCTGATATTGGAATGCCCGTCGCTGCTACCTCGGTTATGTACAGACCTCTCAAAGATTTAAATGGAATACCAGGTGCGCAAAATTTGATTGTGTGCTTGACCGGTTATCTACGCCAGGACCGGGATGACATTATGACAATGGTTGACCTGATGGGCGCACAGTTTTCTAAGCCATTGGTAGCAAACAAGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGATTGGGAACAATAAAGCTAATTAATCATCGATGGTTGGAAGATTGCTTGAAGGAGTGGGCGCTACTTCCTGAAGACAACTATAACAAGAGCGGTCACGAACTAGATATCCCAGCAGCAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCTGAGCTGGGACAATCAGGCGAAAGTAACATAAGCAAAAGTCCCCTCAGTTCAAAATTCGATATAGGGACATCTCATGACTCATCAAAATCAGCAAGAGAGGTACCAAATGCCTTCCCTGATTCTACTGGTCCACAGATTTTGCCAAAAGTCAATAAGGGTAAAGAATCTTCAACTATTCAAGGAAATAAGAGCAGATCTGATAGAGACTTAAGCTTTAGTTGTGTTGATGACCAGAAGGTAGGCAGTGGGGCTCCTGATGTTTCTATGGATGCTACATCTTGCCAGCTGCCTGACACTCACGTTAAGATCAGTGAACCTAAGAATGTTGATTTTCCTCTTGAACCTAGCTGCCAGGATCTTGACATCCCTGAAAATACAAATTCGAATGTTCTGGTATCTAATCTGCATGCCAGCAATTCAGAGTCTAAAAAGTTTGTCAGTGACTCGAAAACAACTTGTGCAAGTACTGAAGGAGTTGCACATTCAGATGCTAAGGTTAGTGCTGCGAGTTATTCCAGGAAAAAACAAAGGAGATTCACTCTTCCAAGGAACTTAAATGAATGTCTGCGCAATGAAACTGGCCCTTCTGGGTCACCTTTGGCTGACTCAAAATTTGGTAACAACCTTGAAACCTCTTCCAGTAAGTTGAAAAATGGAAGTGAGGAAATCAAATCGACCTGTGTTGCAGGTCCTGGGGATGAGCCAATTAGTATATTGCCTCAAAAAAGGATAAATGAAGCTTCTAAAAAATTAAAATCAAAGAAGATGACTGCTGATGCAAAATTGTCCATCAAAAGAGCCCCATCAGCAAATGGAAAATCTCAAGGACTAAAAATGGAATCTCTGGTTGATGAACCACCCAAGGCTGAAGGCTATTTGTCTGTTGGAAAAGATGGTTCAAATAACCCAGCGACTAGCTCAATTTCTAAATCTGCAGCTCCTACCGTGATTTCAATAGCATTCGATGAGCCTTTTTCAAGGAATGCAAGTTCAAAATATGCTCAACGTGACGATGCCAATCAGAATTCAGCACAAATGGCTGTTCAGAGCTTTGCCGAGTCTAAAATTAATGGTCAGCCCGATATCACTGGTCAGGGAATGGGGCAAGTTGACGGTAATGAATCAGAGCAACATGATGCGACAAAAACTTTTGAGTGTTCGTCACCTGGTAACAACAAGTCTCAGAATGAGGAATCATCTGGCCCTACTAATTTGGATACAAGAAATGAAGAAAGTAATAAGCTGATTAGAAAATCACCCCGCAAGAAATCAGTCGCCAAGAGAAGTTTGGGTTCTAGGCCTAAATCAGGTGCTATTGCTAAACAGAAAACATCAGCTTCCTTGAATAAAACTATACCGCAAGGTGAACCTGTAAGTGTTTCCACCGGAATTAAAGACATATCAACCTGTGATGCTGAGAAGCTTCAGGCATCCCCTCAAATCCCAGATGTTAACAAGTCCAAGGAGCAAGAAACTGTTAGTAATTATGCAGAACTTGCTGGTGGAAGACCTGAATCTTTGGATGACGAAACTGAGGCTCCTGATGACAAATATGAATTGGAGTTAGGTGTGGCTCTCGATGAAAGCAAGTCTGAATTGGTTCATGTTTCAAATAAAGCTGAGGAAACAACAGAAGAGAAGTCAGAAGCAATTCACCATATTGAAAAATGTGGAGAAGCAATGCTTCCCAAGGATGATGCAAATGTAACTGAAAATCAGAAGCCACCTTCACGGATGGACTCAACCTCAAAAATTGAAGCAAAGCATCAAGCACGAAAACGTCCTGCAGGTGCAACCAAGAAGACCACTGTTAACAAGAAATTACTGAAATCTAAAGAGGCAGAGTCTGAGGAGAAGATTCCTAGGGAGAGGAAACATGATGCAGAGATGGAAACGCTGGAAGAAGTGTCCCCTGCTGCTGATATAATTGGCAACTCAACTGCACCAAGGAAGACCACAGAAAATTTTATGGAAGTGGATAAGGAGAATAGACCAATTGATGGAGCGCAGGAGATAGTTGAGGGCAAAAGTGTTGGAAATCCAAATATGAAATGGAGCACAAAGCCGGCAAAGAGTAACCCTGAAAAAATGGGTCCTAATCCACCCATAGCAGAAGCTAACACAAGACTGAAAACTGAAGCCCCATGTTTTATATTAAGCGGGCATCGCCTACAGAGAAAGGAGTTTCAGCATGCAATCAAGCAGTTAAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCGACACACTTCATAGCCCCAGAGCCTATACGCAGGACAGAGAAGTTTTTTGCTGCTGCTGCGTCAGGAAGGTGGATTCTCAAAACTGATTTCTTAACTGCTAGCATCCAGGCAGGAATGTTCTTGCCAGAGGAGCCTTATGAGTGGCACAGTAATGGTCTTAGTGAGGATGGTGCCATTAATATGGAGGCTCCGAGAAAGTGGCGGCTGTTAAAAGAGAGAACGGGGCATGGTGCCTTCTATGGAATGCGCATTATTGTATATGGTGACTGCATTAACCCGCCTTTGGACACTCTCAAGCGTGTGGTCAAAGCTGGAGATGGAACAATATTGGCAACTTCTCCTCCTTATACACGTTTCCTTGGTACCGGGATCGACTATGCTGTAGTTAGCCCTGGTATGCCACGTGTTGATTTGTGGGTACAAGAGTTCTTAAAACACGAGATACCTTGCGTCGCAGCCGACTACTTGGTGGAGTATGTTTGCAAGCCGGGGTCGTCCCTTGAGAGGCACGTGTTATATGGCACTCATGCCTGGGCTGAGAGCTCACATGCTAAACTTGAGAGCAGACCAGAAGAGGCTGAGGAGCTCTTTACCCCTCAAGACTGTGATAGCAATGATACGATTTGCCAAGTATGTGGATCCCGGGATAGAGGAGATGTAATGCTGATTTGTGGCGACGAAAGTGGTTCCGTTGGTTGTGGAGTTGGCACCCATATTGACTGCTGCGATCCACCCCTCACGGATGTTCCCGAGGAGGATTGGTTTTGCCCAAAGTGCAGTGGAGCCGGAAACTGCTCAAAACCTCTCAAGAAAAGGAAAAAGGGTGCCTTGTCTTTGTCCAAGAGGAAGTGA 3750 0.4475 MLATSYPSQVFRGVHFALFGFTPITESKVRFKLVNGGAVDVGQYNANCTHVIVDEIAYDDPVCVAARNDGKTLVTSLWVDHSADIGMPVAATSVMYRPLKDLNGIPGAQNLIVCLTGYLRQDRDDIMTMVDLMGAQFSKPLVANKVTHLVCYKFEGEKYELAKRLGTIKLINHRWLEDCLKEWALLPEDNYNKSGHELDIPAAEAKDSEEEAEDSELGQSGESNISKSPLSSKFDIGTSHDSSKSAREVPNAFPDSTGPQILPKVNKGKESSTIQGNKSRSDRDLSFSCVDDQKVGSGAPDVSMDATSCQLPDTHVKISEPKNVDFPLEPSCQDLDIPENTNSNVLVSNLHASNSESKKFVSDSKTTCASTEGVAHSDAKVSAASYSRKKQRRFTLPRNLNECLRNETGPSGSPLADSKFGNNLETSSSKLKNGSEEIKSTCVAGPGDEPISILPQKRINEASKKLKSKKMTADAKLSIKRAPSANGKSQGLKMESLVDEPPKAEGYLSVGKDGSNNPATSSISKSAAPTVISIAFDEPFSRNASSKYAQRDDANQNSAQMAVQSFAESKINGQPDITGQGMGQVDGNESEQHDATKTFECSSPGNNKSQNEESSGPTNLDTRNEESNKLIRKSPRKKSVAKRSLGSRPKSGAIAKQKTSASLNKTIPQGEPVSVSTGIKDISTCDAEKLQASPQIPDVNKSKEQETVSNYAELAGGRPESLDDETEAPDDKYELELGVALDESKSELVHVSNKAEETTEEKSEAIHHIEKCGEAMLPKDDANVTENQKPPSRMDSTSKIEAKHQARKRPAGATKKTTVNKKLLKSKEAESEEKIPRERKHDAEMETLEEVSPAADIIGNSTAPRKTTENFMEVDKENRPIDGAQEIVEGKSVGNPNMKWSTKPAKSNPEKMGPNPPIAEANTRLKTEAPCFILSGHRLQRKEFQHAIKQLKGRVCRDSHQWSYQATHFIAPEPIRRTEKFFAAAASGRWILKTDFLTASIQAGMFLPEEPYEWHSNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIIVYGDCINPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAVVSPGMPRVDLWVQEFLKHEIPCVAADYLVEYVCKPGSSLERHVLYGTHAWAESSHAKLESRPEEAEELFTPQDCDSNDTICQVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLTDVPEEDWFCPKCSGAGNCSKPLKKRKKGALSLSKRK* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2002 1249 MobiDBLite consensus disorder prediction 203 304 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 401 436 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 597 624 - -
Dod06g2002 1249 CDD BRCT_TopBP1_rpt7 930 1004 - -
Dod06g2002 1249 Pfam twin BRCT domain 111 175 IPR001357 -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 892 916 - -
Dod06g2002 1249 SUPERFAMILY BRCT domain 7 89 IPR036420 -
Dod06g2002 1249 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Dod06g2002 1249 SUPERFAMILY BRCT domain 932 1018 IPR036420 -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 503 524 - -
Dod06g2002 1249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1142 1230 IPR013083 -
Dod06g2002 1249 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Dod06g2002 1249 SUPERFAMILY FYVE/PHD zinc finger 1165 1235 IPR011011 -
Dod06g2002 1249 Coils Coil 741 761 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 571 589 - -
Dod06g2002 1249 Gene3D BRCT domain 924 1040 IPR036420 -
Dod06g2002 1249 ProSiteProfiles BRCT domain profile. 932 1014 IPR001357 -
Dod06g2002 1249 Gene3D BRCT domain 1 93 IPR036420 -
Dod06g2002 1249 ProSiteProfiles Zinc finger PHD-type profile. 1172 1228 IPR019787 -
Dod06g2002 1249 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1225 IPR044254 -
Dod06g2002 1249 Gene3D BRCT domain 99 225 IPR036420 -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 821 844 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 774 844 - -
Dod06g2002 1249 SMART BRCT_7 106 183 IPR001357 -
Dod06g2002 1249 SMART BRCT_7 924 1004 IPR001357 -
Dod06g2002 1249 SMART BRCT_7 8 86 IPR001357 -
Dod06g2002 1249 SMART BRCT_7 1042 1129 IPR001357 -
Dod06g2002 1249 Pfam BRCA1 C Terminus (BRCT) domain 936 1001 IPR001357 -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 397 444 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 218 250 - -
Dod06g2002 1249 SMART PHD_3 1174 1226 IPR001965 -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 695 709 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 690 728 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 653 676 - -
Dod06g2002 1249 Pfam PHD-finger 1174 1226 IPR019787 -
Dod06g2002 1249 Gene3D BRCT domain 1041 1141 IPR036420 -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 266 283 - -
Dod06g2002 1249 MobiDBLite consensus disorder prediction 571 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2002 Dod-Chr6 31928418 31935646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2002 129 217 Core DNA Replication Machinery Family AT4G02110 74.157 1.99e-37 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod06g2002 BRCT 9.2e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2002 K10728 - jre:109009928 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2002 06 31928418 31935646 Dod06g2002 06 31928418 31935646 ECH