Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1978 ATGGAGAAGAAGGAGATGACTGTCAAGGCTGAGGATGCTACTTTTGGGTCCTCTTCTATGCCTTGTTATGGTTCAAACGCTTACCCATTCTCAAGCGCGTTTGATTTTTGTGAGGCGGAAAAGGGCTCTTTAGGGTTTATGGAGTTGCTAGGAGTGCAGGACTACAGTCCTGTGCTTGATTTGCCGCAATTGTCAACGGTGCCTTTCGCTCATCCTTCTACGCTTAAGGTTCCGTCGTCTGATACTGCAGGAAAAGAGTGTTCCGAGGTGTCGAACCAGCAACCTGCCACTCCTAACTCGTCATCGATTTCGTCGACGTCGAGTGAGGCACTCAATGATGAACAGGATAAAGCAGAAGAAGGAGCTGAAGATGAACAGCAAAAGACCAAGAAACAGTTGAAGCCCAAGAAGACAAACCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAGGACGGGTACAGATGGAGAAAGTACGGTCAAAAGGCTGTGAAAAACAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTAAAGAAGCGTGTGGAGCGTTCTTTTACTGATCCAAGCGTTGTAGTGACCACCTATGAAGGCCAACACACACATCCAAGCCCAGTTATGACCCGGTCAGGCCTCGCCGGAGCTCCGATACCGCCGGGTTTCTCTGCCGGATATGCCACCGGCTTCGGTTCAGCTTTGCCGGGAAACTACTTGTCACAGTTTCAGCAGCAGCACCAACAGCAACTACTCCTGGTCAACACATTGTCCTCTTTGGGTTTCCCTTTCAACGATACTTCAGCTTCAAGGAACGCCGCTTTTCCACAAGAGAGAAGGCTTTGCAATCCTGGAACCACTGCATCATTTCTAAGGGACCATGGGCTTCTTCAAGATGTTATTCCTTCACACATGTTGAAAGAAGAGTAG 966 0.4876 MEKKEMTVKAEDATFGSSSMPCYGSNAYPFSSAFDFCEAEKGSLGFMELLGVQDYSPVLDLPQLSTVPFAHPSTLKVPSSDTAGKECSEVSNQQPATPNSSSISSTSSEALNDEQDKAEEGAEDEQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMTRSGLAGAPIPPGFSAGYATGFGSALPGNYLSQFQQQHQQQLLLVNTLSSLGFPFNDTSASRNAAFPQERRLCNPGTTASFLRDHGLLQDVIPSHMLKEE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1978 321 Gene3D WRKY domain 144 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod06g1978 321 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 313 IPR044810 GO:0003700
Dod06g1978 321 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod06g1978 321 PIRSF WRKY_txn_fact_IIc 1 321 IPR017396 GO:0003700
Dod06g1978 321 Coils Coil 108 128 - -
Dod06g1978 321 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod06g1978 321 PANTHER WRKY TRANSCRIPTION FACTOR 1 313 - -
Dod06g1978 321 SUPERFAMILY WRKY DNA-binding domain 151 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod06g1978 321 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod06g1978 321 MobiDBLite consensus disorder prediction 73 111 - -
Dod06g1978 321 MobiDBLite consensus disorder prediction 73 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1978 Dod-Chr6 30473496 30475366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1978 28 321 WRKY Transcription Factor Family AT2G47260 48.036 1.55e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dod06g1978 WRKY 1.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1978 - - aprc:113872234 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1978 06 30473496 30475366 Dod06g1978 06 30473496 30475366 ECH
Dod01g3173 01 72605564 72607582 Dod06g1978 06 30473496 30475366 PCT