Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1972 ATGGAGATGGGGTACACAACCGGGAGTGTTGGCATGATGAGAAGTTTATCAGATTGTGGCTCATCAGCAACAAATGGGAGCGAAGAAGATATGTTAATAAGGAAAGGTCCATGGACAGAAGAAGAGGATTCTGTTCTGATCAACTATATCGCCATCCACGGTGAAGGTCACTGGAACTCGGTGGCTCGCTCTGCAGGTCTAAAGCGAACTGGCAAAAGCTGCAGATTAAGATGGTTAAATTACTTGCGTCCAAATGTTAGACGTGGGAGTATCACCCTCCAAGAACAGCTCTTGATTCTCGACCTCCATTCCCGCTGGGGCAATAGGTGGTCTAAAATAGCAGAACAATTGCCTGGCAGAACAGACAACGAGATCAAGAACTATTGGAGGACAAGAGTGGTGAAGCAGGCTAAGCAACTCAAATGCGACGTCAATAGCAAACAGTTCAGAGACACCATGCGTTATGTATGGATGCCACGCCTCATGGAGCAGATTCAGGCCTCTTGCGGGAATGGTCCTTCCCATAACCAAGGCCAAACCACCTTGTCCAACGCTCGAGCCCGCAGTGAACCTTGTGTAACCAATCCTATTAGCACGTTGTCTTTGGCTTCATCTTACTCTTCATCACCATTTCAGGCTCAAACTTCTTCTCTCTCTGACTCTTGTGTGTCTTACAATGCCATTGGTGGTGGTGGTGGTGGTTTCTGGTCATCATCGGATAGTGAAGAAAAAGGAGCCACATCCACCCCATTGCAGCAGAGGGACCAATCCGACATCCGAGCATTTGAACCTGAAATTGGGTTTGGTGGTGCGGACTTGTGGACCGATGAAAACATATGGTTCTTGCAACAGCAGCTTGCTGATGGCTTGTGA 873 0.48 MEMGYTTGSVGMMRSLSDCGSSATNGSEEDMLIRKGPWTEEEDSVLINYIAIHGEGHWNSVARSAGLKRTGKSCRLRWLNYLRPNVRRGSITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTMRYVWMPRLMEQIQASCGNGPSHNQGQTTLSNARARSEPCVTNPISTLSLASSYSSSPFQAQTSSLSDSCVSYNAIGGGGGGFWSSSDSEEKGATSTPLQQRDQSDIRAFEPEIGFGGADLWTDENIWFLQQQLADGL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1972 290 MobiDBLite consensus disorder prediction 234 258 - -
Dod06g1972 290 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Dod06g1972 290 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Dod06g1972 290 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Dod06g1972 290 SMART sant 87 135 IPR001005 -
Dod06g1972 290 SMART sant 34 84 IPR001005 -
Dod06g1972 290 Gene3D - 92 133 - -
Dod06g1972 290 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Dod06g1972 290 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Dod06g1972 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Dod06g1972 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Dod06g1972 290 PANTHER - 25 259 - -
Dod06g1972 290 CDD SANT 92 131 IPR001005 -
Dod06g1972 290 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 25 259 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod06g1972 290 MobiDBLite consensus disorder prediction 168 188 - -
Dod06g1972 290 MobiDBLite consensus disorder prediction 240 256 - -
Dod06g1972 290 CDD SANT 37 82 IPR001005 -
Dod06g1972 290 Gene3D - 35 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1972 Dod-Chr6 29821658 29823278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1972 28 287 MYB Transcription Factor Family AT2G47190 49.042 1.19e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod06g1972 Myb_DNA-binding 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1972 K09422 - gmx:100777932 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1972 06 29821658 29823278 Dod06g1972 06 29821658 29823278 ECH