Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1971 ATGGATGTTAAGGCTAAGAAGAGTGTTTCTGCAGCACAGGCACAGGTGCAAAAGAATGAAAACGATTCGATGGTCCTCAGGAAAGGTCCATGGGCGGTTGATGAGGACACCATTCTCGTCAATTACGTCTCCACCCACGGTGAGGGTCACTGGAATTCTGTTGCACGCTGTGCAGGTTTGAAGAGAAGTGGGAAAAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGATGTACGGCGTGGAAATATCACACTCCAAGAACAGATATTGATTCTTGACCTCCACTCTCGGTGGGGCAATAGGTGGTCCAAGATTGCTAAGCAGCTGCCGGGAAGAACAGACAACGAAATCAAGAACTATTGGAGGACCAGGGTGATAAAGCAGGCAAAGCAGCTCAAGTGCGATGTCAACAGCAAGCAGTTCAGGGACGTCCTGCGTCATGTGTGGATGCCGCGCTTGCTCGAGAGGGTTCACCCCGCATACCAATCTCTCGAGCCTCAGAAACAACTGAACCAAAACACAAGTAGAGCTGATGAGGTTGTCCTTCTTAACCAAAACGGGTCACGCGGTTCAGATTCAGGACCAGTACTGTGCGCAAAACAGAACCACGACAACTGTTCCTGTGTCAGTGGTACTTCCTCGGACTCGTCATCCGCGGAGTTCCACGTTCCTTCAAATTCGGACGGCGACGATTCTGCCGAACTGTTGGGTCGTGATGTTTCGGTCCGAAGTGTTGAAAATCCGTGGTCAAGTTTCAATAATGGTTACTTGTTTGAACAGGGGACAAGTGGTGGTGACTCGCTAGAGAGTTTGTGGAACGACGAGAATATGTGGTTTTTGCAACAACAACTTTCCGATGACCTCGAAACGAAATTCAATTCCCTTGCGTGA 894 0.4944 MDVKAKKSVSAAQAQVQKNENDSMVLRKGPWAVDEDTILVNYVSTHGEGHWNSVARCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAKQLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDVLRHVWMPRLLERVHPAYQSLEPQKQLNQNTSRADEVVLLNQNGSRGSDSGPVLCAKQNHDNCSCVSGTSSDSSSAEFHVPSNSDGDDSAELLGRDVSVRSVENPWSSFNNGYLFEQGTSGGDSLESLWNDENMWFLQQQLSDDLETKFNSLA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1971 297 SUPERFAMILY Homeodomain-like 27 122 IPR009057 -
Dod06g1971 297 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Dod06g1971 297 MobiDBLite consensus disorder prediction 213 234 - -
Dod06g1971 297 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Dod06g1971 297 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Dod06g1971 297 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Dod06g1971 297 Gene3D - 85 126 - -
Dod06g1971 297 CDD SANT 85 124 IPR001005 -
Dod06g1971 297 SMART sant 27 77 IPR001005 -
Dod06g1971 297 SMART sant 80 128 IPR001005 -
Dod06g1971 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Dod06g1971 297 CDD SANT 30 75 IPR001005 -
Dod06g1971 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Dod06g1971 297 PANTHER MYB TRANSCRIPTION FACTOR 1 286 - -
Dod06g1971 297 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 286 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod06g1971 297 Gene3D - 28 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1971 Dod-Chr6 29781375 29783134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1971 19 288 MYB Transcription Factor Family AT2G47190 49.632 6.89e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod06g1971 Myb_DNA-binding 5.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1971 K09422 - gmx:778065 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3193 01 72793389 72795450 Dod06g1971 06 29781375 29783134 PCT