Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1955 ATGAACCACGCGATTTTGAGGTTTCAGGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGTTGCTTGGTTATTGTCTTGATGGGGCCTCCCGTGTTCTTGCTTATGAGTTTGCATCTAATGGTTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTAAAAGGGGCACAGCCTGGTCCAGTTTTGACATGGGCTCAGAGAGTGAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTAACCCTCACATTATCCACAGGGACATCAAGTCAAGCAATGTACTAATCTTTGAAGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAAGCTCCTGACATGGCTGCGCGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAATTGAATGCAAAGAGTGATGTGTACAGTTTCGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAACCTGTAGATCATACACTACCTCGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAGCTGAGTGAGGATAAAGTCAAGCAGTGTGTTGATGCGAGACTTGGAGAAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCGCTGTGTGTGCAATATGAAGCTGATTTTAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCACGACCTGGACCTGCTGGTGAAACACCAAATTAA 777 0.4402 MNHAILRFQVSMVSRLKHENFVQLLGYCLDGASRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLIFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDARLGEEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETPN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1955 258 SMART serkin_6 3 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g1955 258 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672|GO:0006468
Dod06g1955 258 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g1955 258 Gene3D Phosphorylase Kinase; domain 1 3 41 - -
Dod06g1955 258 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 9 256 - -
Dod06g1955 258 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 9 256 - -
Dod06g1955 258 Pfam Protein tyrosine and serine/threonine kinase 9 242 IPR001245 GO:0004672|GO:0006468
Dod06g1955 258 SUPERFAMILY Protein kinase-like (PK-like) 8 244 IPR011009 -
Dod06g1955 258 Gene3D Transferase(Phosphotransferase) domain 1 42 250 - -
Dod06g1955 258 PIRSF ILK 4 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1955 Dod-Chr6 29145260 29147044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1955 6 249 Receptor kinase-like Gene Family AT3G58690 50.612 6.52e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Dod06g1955 PK_Tyr_Ser-Thr 7.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1955 K13436 - gmx:100817460 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1955 06 29145260 29147044 Dod06g1955 06 29145260 29147044 ECH