Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1954 ATGAAAGGCAAGGTGATTTTGTCTGGTGTTTCCCTCATCCTGGTGGTTGGTGTTGCAATAGGCGTTGTTGTTGTTGTCAACAAGACAAAGGACAACTCTAACCCTGAGGTAGCAGCACACCAAAAGTCAGTGAATTTCATGTGCCAGGACACACAAGACCCCAAGCTTTGCCAGGACACCCTTGGCAACGTGCAATCCGCGTCTGCCTCGGATCCCAAGGCTTACATAGCCGCTGCAGTGGAAGCAAGCACAAACAGCGTCATCCAGGCCTTGAACATGAGTGACAGGCTCTCAGTGGATCATAGCAACAACAACACTGGCATCAAGATGGCTCTCGATGACTGCAAGGACCTGATGCAATTTGCCTTGGACAGCCTCCAGTCCTCGACAAACTTGGTCCGTGACAACAACATCCAGGCGGTGCATGATCAAACCTCTGACTTCAGGAATTGGCTGAGTGCTGTTATTTCTTACCAGCAATCATGCATGGACGGTTTTGATGACGGGAACGGCGGTGAGGCACAGGTGAAAGAACAGTTGCAACAGCAGAGCTTGGACCAAATGGGGAAGCTCACTGGCATCACGCTTGACATTGTCACTGGCTTGTCCAACATCCTTGAGAATTTTGGATTGAAGTTGGATCTGAAACCCGCGTCTCGTCGTCTCATGGAGGCAGAGGAGGTTGATGGAGAAGGGTTCCCAACTTGGTTCTCTGCTGCGGATCGCAAGCTCTTGGGTAGGTTGCCCCCTGGAGGTAATGGTAATAATAATGTGCAACCCAATGCTGTGGTTGCCCAGGATGGCAGTGGTCAGTTTAAGACCATTGCGGATGCTATTGCCTCATACCCTAAGGGCTTCAACGGACGATACATTATCTATGTTAAGGCTGGGATCTACGCTGAGTACATCACCATCCCTAAAACGTCAGCAAATATTCTTATGTACGGTGATGGCCCTACGAGTACGATTGTCACTGGTAACAAAAACTTTGTAGACGGTGTGAAGACATTGCAAACTGCAACGTTCGCCAACACCGCACCCGGGTTCATTGCCAAGTCAATGGCATTCGAGAACACTGCGGGAGCAGCAAAACACCAGGCAGTGGCATTCCGGAACCAGGGAGACATGTCGGCCTTCTTCGACTGCGCCATGCACGGTTACCAGGACACCTTATACGCCCAAGCGAACCGCCAGTTCTACCGCAACTGCGAAATCTCAGGCACCATTGACTTCATCTTCGGCGTTTCCTCTACCTTGATCCAGAACTGCAGACTCATCGTGAGGATGCCAGGCCCAAGTCAATTCAACACAGTGACCGCAGATGGAACTGTCCAAAAGAACATGGCCACAGGGATTGTGCTCCAAAACTGTGATATCTTGCCAGATAATATCCTGTTTCCCGCCCGCCTCCAAGTCCAATCGTTTTTGGGTAGGCCATGGAAGGCATATGCTAGAACTGTTGTTATGGAATCCAATATCGGTGACTTAATTCAACCTGCTGGGTGGAGTGTTTGGAATGGGAACCAATTCCTTGACACCTTGTACTATGCTGAATATAACAACGTTGGACCCGGTGCCAACGTCCAAGGAAGAGTTAAGTGGCCCGGTTACCATCCAAACATTAATAGAAATGACGCTGCAATGTTCACTGCTGGCCAATTCCTCAAAGCTGGACCTTCCGGAAGAGCTGAGGATTGGTTGACCGCTACTGGCATTCCTTTTGACATTGGCTTCACCAAACCTTGA 1746 0.4989 MKGKVILSGVSLILVVGVAIGVVVVVNKTKDNSNPEVAAHQKSVNFMCQDTQDPKLCQDTLGNVQSASASDPKAYIAAAVEASTNSVIQALNMSDRLSVDHSNNNTGIKMALDDCKDLMQFALDSLQSSTNLVRDNNIQAVHDQTSDFRNWLSAVISYQQSCMDGFDDGNGGEAQVKEQLQQQSLDQMGKLTGITLDIVTGLSNILENFGLKLDLKPASRRLMEAEEVDGEGFPTWFSAADRKLLGRLPPGGNGNNNVQPNAVVAQDGSGQFKTIADAIASYPKGFNGRYIIYVKAGIYAEYITIPKTSANILMYGDGPTSTIVTGNKNFVDGVKTLQTATFANTAPGFIAKSMAFENTAGAAKHQAVAFRNQGDMSAFFDCAMHGYQDTLYAQANRQFYRNCEISGTIDFIFGVSSTLIQNCRLIVRMPGPSQFNTVTADGTVQKNMATGIVLQNCDILPDNILFPARLQVQSFLGRPWKAYARTVVMESNIGDLIQPAGWSVWNGNQFLDTLYYAEYNNVGPGANVQGRVKWPGYHPNINRNDAAMFTAGQFLKAGPSGRAEDWLTATGIPFDIGFTKP* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1954 581 PANTHER PECTINESTERASE 3 578 - -
Dod06g1954 581 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Dod06g1954 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 202 IPR035513 -
Dod06g1954 581 SMART PMEI_2 39 198 IPR006501 GO:0004857
Dod06g1954 581 CDD PMEI-like_3 47 204 - -
Dod06g1954 581 Pfam Pectinesterase 261 556 IPR000070 GO:0030599|GO:0042545
Dod06g1954 581 Pfam Plant invertase/pectin methylesterase inhibitor 44 198 IPR006501 GO:0004857
Dod06g1954 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 203 IPR035513 -
Dod06g1954 581 SUPERFAMILY Pectin lyase-like 259 575 IPR011050 -
Dod06g1954 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 202 IPR006501 GO:0004857
Dod06g1954 581 Gene3D - 255 578 IPR012334 -
Dod06g1954 581 PANTHER PECTINESTERASE 3 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1954 Dod-Chr6 29111880 29114362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1954 42 578 Carbohydrate Esterase AT2G26450 40.370 2.16e-134 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1954 K01051 - gmx:100775246 838.565