Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1953 ATGAAGGGAAAAATAGTCGTCTCCGTCACTTGCCTCATCCTCGTGGTGGGTGTCGTCATCGGCGCTGTAGTTATCCACAACAGGAGCACCAAGTCTGACTCTAAGGATCAGCCTGCGGCAGCAGGTAACGTCGCTGCGGTGTCGAGAATATGCCAAAGCACACAGGACCAGAAGCTTTGCCAAGATACCTTGAGCCCTGTGAAGGATACCACTGACCCCAAGGCATACATTGCGGCCGCAGTGAAAGCCACCACCGATAGCGTCATCAAGGCTTTCAACATGAGCGACAGGCTCACAGTGGAACAAGGCGCCAAGGACGAAGGCCTCAAGATGGCCCTTGAAGACTGCAAGGACCTGTTGCAATCCGCCATTGACAGCCTCGAACTCACCACCAACATGGTCGGTGACAACAACATCAAGGCAGTGCACGACCGATCCTCAGACTTCAGGAACTGGCTGAGTGCTGTCATCTCGTACCAGCAAGCTTGCTTCAACGGCTTCGACACCAGCAAGGACGGTGAGAAAGCCGTTATGGATCAGCTGAACTCGGACAGCCTTGACAATATAGAAAAAATCACAGGGATAACCCTCGACATTGTCTCCGATTTGTCCAATATCCTTCAGGAATTCAACTTGAAGCTCGATTTGAAGCCGGCTTCTCGCCGCCTCTTGGCTTTGGACGTTGACAGCGAAGGGCTCCCTACATGGTTGTCGGCTGCGGACCGCAAGCTCTTGCAGAAGATTAACCGCCTACAAAAGAAGAAGAACGCACAACAGGGTGCACCCAACGTGGTGGTTGCCAAGGATGGAAGTGGACGGTTCAGGACCATCAAGGAAGCTATTGACTCTTACCCTCCTGGCTTCAGGGGAAGATACGTTATCTATGTTAAGGCTGGTGTCTATAATGAGTACATCATTGTTCCTAAGACCGCCGTGAACATTCTCATGTACGGTGATGGCCCTACGAGGACCATTATCACTGGCAATAAGAATTTTGCTAATGGCGTGAAAACAATGAACACCGCCACTTTCGCCAACACCGCAAACGGATTCATTGCCAAGGCAATCAGGTTTGAGAACACCGCTGGCCCCGATGGTCACCAAGCTGTGGCACTCCGTAACCAGGGAGACATGTCTGCTTTCTTTGACTGCCACATCCTCGGCTACCAAGACACCTTGTACACCCAAACCAACAGACAATTCTACCGCAACTGCGAAATCGCTGGCACCATCGACTTCATCTTCGGCGTGTCCCCAACCTTGATCCAGAACAGCAAGATCATCGTGAGGAAGCCTAACCGCAACCAGTTCAACACCGTGACCGCTGACGGCACAACCCAGAAGAACATGGCCACTGGGATTGTCCTCCAGAACTGCGAGATTGTCCCAGAGCCTGCCCTCTTCCCTGTAAGATTTGAATACAAGTCCTACTTGGGCAGGCCATGGAAGGCATACGCAAAGACTGTGGTTATGGAATCAAACATTGAAGACTTCCTTAACCCAGAAGGGTGGACTCCTTGGGCTGGAAGCCAGTTCCTTGACACCTTGTACTATGCTGAGTATGCCAACACTGGACCCGGTGCCAATACTGTGGGAAGGATCAAGTGGAAGGGTTACCGCCCCAGCATTAGCAAGGCTGAAGCTGAAAAGTTCACAGCTGGCCAGTTCCTCAGCGCTGGACCTGCTGGCAGTGCTGAGCAGTGGTTGTCTGCTGCTGGCGTTCCTTTCACCGCTGGCTTCGCCAAGGCTTAA 1752 0.5234 MKGKIVVSVTCLILVVGVVIGAVVIHNRSTKSDSKDQPAAAGNVAAVSRICQSTQDQKLCQDTLSPVKDTTDPKAYIAAAVKATTDSVIKAFNMSDRLTVEQGAKDEGLKMALEDCKDLLQSAIDSLELTTNMVGDNNIKAVHDRSSDFRNWLSAVISYQQACFNGFDTSKDGEKAVMDQLNSDSLDNIEKITGITLDIVSDLSNILQEFNLKLDLKPASRRLLALDVDSEGLPTWLSAADRKLLQKINRLQKKKNAQQGAPNVVVAKDGSGRFRTIKEAIDSYPPGFRGRYVIYVKAGVYNEYIIVPKTAVNILMYGDGPTRTIITGNKNFANGVKTMNTATFANTANGFIAKAIRFENTAGPDGHQAVALRNQGDMSAFFDCHILGYQDTLYTQTNRQFYRNCEIAGTIDFIFGVSPTLIQNSKIIVRKPNRNQFNTVTADGTTQKNMATGIVLQNCEIVPEPALFPVRFEYKSYLGRPWKAYAKTVVMESNIEDFLNPEGWTPWAGSQFLDTLYYAEYANTGPGANTVGRIKWKGYRPSISKAEAEKFTAGQFLSAGPAGSAEQWLSAAGVPFTAGFAKA* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1953 583 Gene3D - 257 580 IPR012334 -
Dod06g1953 583 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Dod06g1953 583 SMART PMEI_2 42 199 IPR006501 GO:0004857
Dod06g1953 583 CDD PMEI-like_3 50 205 - -
Dod06g1953 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 204 IPR035513 -
Dod06g1953 583 Pfam Plant invertase/pectin methylesterase inhibitor 46 199 IPR006501 GO:0004857
Dod06g1953 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 205 IPR035513 -
Dod06g1953 583 Pfam Pectinesterase 263 558 IPR000070 GO:0030599|GO:0042545
Dod06g1953 583 PANTHER PECTINESTERASE 3 581 - -
Dod06g1953 583 SUPERFAMILY Pectin lyase-like 261 578 IPR011050 -
Dod06g1953 583 PANTHER PECTINESTERASE 3 581 - -
Dod06g1953 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 200 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1953 Dod-Chr6 29099631 29103129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1953 5 580 Carbohydrate Esterase AT3G05610 38.860 7.59e-138 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1953 K01051 - gmx:100775246 769.229