Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1952 ATGAAGGCCAAAATACTTGCCTCCGCAGTTTCTCTCATCGTGGTGATTGGTGTTGTCATTGGCGTCGTGGTTGTTATCAACAACCAAAAGAACAACAAAGGGGGCGAACTGATCAGTACCCAAAACAAGGTCGATGTGATGACCTTGTGCCAGAACTCAGATGACCAGAAGCTCTGCAATGATGTTCTGGGCCCTGTCAACACCACAGACCCAAAGGGCTACATCTCAGCCGTGGTGAAAACCACCATGGGCAGCGTCATCAAGGCCTTCAACATGACCGATACGCTTGCGGTGGAGAACGGAAACAGCAGCCCAGTGATCCAGATGGCCCTTGAGGACTGCAAGGACCTGTTGCAATCCGCCATTGAAGAACTCCAGGCCTGCGACGCTTTGGTCAGTGGGAGCACCACTGATCAAGATGTCACTGACCACGTCGCAGATATAAAGAACTTGTTGGGTGCTGTCATTGGATACCAACAATCGTGCCTTGATGGTTTTGACACTGACGGTGGGAAGGTGGTTCAGTCTCAGTTGCAAAGTGGCGGCTTGGACGATGTAGGGAAGTTCACGGGGTTGGCACTTGATGTAGTTTCTGGGCTCTATAACGTTAGCGCGTTTGCTGTTTTTGGCTTGAACTTGAATCAGAAACCTGTGTCTCGACGCCTCCTTGAGCTGATGGATCAAGAAGGTTACCCATCTTGGTTTTCTTCTGCTGATCGCAAGCTCTTGTCTGAGCTCCAAAAAGGGGTGGTTGTGCCTAATGTTGTGGTGGCCAAGGATGGTAGTGGCCAATATGTGACTGTTTTGGATGCTGTTAACTCGTACCCGATGAACTACCAGGGGAGATACGTTATCTATGTTAAGGCTGGGGTATATAATGAGTCCATTACAATTGACAAGGACAAGAAGAATATTCTCTTGTACGGTGATGGCCCCAACAACACCATCATCACTGGGAGCAAAAACGTCAACGCAGGTCTTACGACAAGAAGAACTGCCACATTCTCCACTTCTGCCGATGATTTCATTGCCAAGTCAATTGCGTTCGAGAACACCGCTGGTCCAGAAGGTCATCAAGCAGTGGCACTTCTCGTGCAAGGCGATCGTTCGGCAATCTTCGACTGCACCCTGCGTGGCTACCAAGACACAATGTACGCCCACACCCACCGCCAGTTCTACCGAAGCTGCGAAATCTACGGCACCGTCGACTTCATCTTTGGTTACTCCACCACCTTGATCCAGGACTGCAAGATCTTTGTGCGGAAACCAGGTCCAAACCAACAGAACATAGTGGTGGCAGATGGCACAAAGCAAAAGAACATGCCCACAGGGGTTGTCCTTCAGAACTGCCAGATCATGCCAGAGGCTAGCCTCTACCCTGACAGGCTGACTGTGAAGTCTTACTTGGCAAGACCATGGAAGGCATTCTCAAGGGCAGTGTTCATGGAAAATGTGATTGGTGACTTGATTCAGCCAGAAGGGTTCATTCCTTGGTCACCTATTGTGCCAAACACTCAAAATTGTTACTTTGCTGAGTATGCCAACACTGGGCTTGGTGCCAATACTCAAAGCAGGCCTAAATGGGGGAAAGGCCTCATTAGCGTGGAGGAGGCTGTTAGATTCACTGCTGAGCAGTGGCTCCAAGCCGGCACTTGGTTGCCGGCCACAGGCATTCCTTTCGATTCTGGCTTCACCAAATCTTGA 1704 0.5006 MKAKILASAVSLIVVIGVVIGVVVVINNQKNNKGGELISTQNKVDVMTLCQNSDDQKLCNDVLGPVNTTDPKGYISAVVKTTMGSVIKAFNMTDTLAVENGNSSPVIQMALEDCKDLLQSAIEELQACDALVSGSTTDQDVTDHVADIKNLLGAVIGYQQSCLDGFDTDGGKVVQSQLQSGGLDDVGKFTGLALDVVSGLYNVSAFAVFGLNLNQKPVSRRLLELMDQEGYPSWFSSADRKLLSELQKGVVVPNVVVAKDGSGQYVTVLDAVNSYPMNYQGRYVIYVKAGVYNESITIDKDKKNILLYGDGPNNTIITGSKNVNAGLTTRRTATFSTSADDFIAKSIAFENTAGPEGHQAVALLVQGDRSAIFDCTLRGYQDTMYAHTHRQFYRSCEIYGTVDFIFGYSTTLIQDCKIFVRKPGPNQQNIVVADGTKQKNMPTGVVLQNCQIMPEASLYPDRLTVKSYLARPWKAFSRAVFMENVIGDLIQPEGFIPWSPIVPNTQNCYFAEYANTGLGANTQSRPKWGKGLISVEEAVRFTAEQWLQAGTWLPATGIPFDSGFTKS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1952 567 Pfam Pectinesterase 254 549 IPR000070 GO:0030599|GO:0042545
Dod06g1952 567 Pfam Plant invertase/pectin methylesterase inhibitor 46 194 IPR006501 GO:0004857
Dod06g1952 567 PANTHER PECTINESTERASE 4 564 - -
Dod06g1952 567 CDD PMEI-like_3 48 200 - -
Dod06g1952 567 SUPERFAMILY Pectin lyase-like 253 562 IPR011050 -
Dod06g1952 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 200 IPR035513 -
Dod06g1952 567 Gene3D - 249 564 IPR012334 -
Dod06g1952 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 198 IPR035513 -
Dod06g1952 567 SMART PMEI_2 41 196 IPR006501 GO:0004857
Dod06g1952 567 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Dod06g1952 567 PANTHER PECTINESTERASE 4 564 - -
Dod06g1952 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 39 175 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1952 Dod-Chr6 29083213 29085901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1952 3 564 Carbohydrate Esterase AT3G62170 37.583 2.84e-124 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1952 K01051 - gmx:100808559 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3338 01 74514277 74515335 Dod06g1952 06 29083213 29085901 ECH
Dod06g1952 06 29083213 29085901 Dod06g1952 06 29083213 29085901 ECH