Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1949 ATGGGTGCAGAGAATGGCGCGGATGGCAGAGGGAATAAACATGATGATGAGGCAACCACATCAGAGAATCTTGCTGAATCCAGCAAGAACGGTGAAAAAGAAGAGAAGGTCAAGAAAAAGGAGAAACCTGAAACGGTGCCGTTTCACAAGCTGTTCTCCTTTGCAGACTCCACTGACATTCTGCTGATGGCTGTCGGGACCATTGGTGCCATTGGGAATGGTTTGAGTTTGCCATTCATGACGTTACTGTTCGGTCAAATGATTGATAGCTTTGGAAACAATCAGCAGAGCACAGACGTAGTGAAAGAAGTTTCCAAGGTCTCTCTTAAATTTGTGTATTTGGCAATAGGATCTGGTTGTTCAGCATTCCTCCAGGTGGCTTCTTGGATGGTAACAGGAGAGAGACAGGCTGCACGAATTAGGGGATTGTATTTGAGAACTATACTGAGACAAGATGTTGCTTTCTTTGACAAAGAAACAAACACCGGAGAGGTGGTTGGGAGGATGTCAGGTGACACGGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAGTTTATTCAGCTAATAGCAACATTCATTGGGGGATTTGTGATAGCCTTTGTCAAAGGGTGGCTTCTTACCCTTGTCTTGTTGTCCACTCTTCCACTCCTTGTTATGTCTGGAGCTTCTATGGCCATAGTCATAGGCATGATGGCTTCGCGAGGCCAAACTGCTTATGCAAAAGCTGCACACATAGTTGAACAAACAATTGGCTCAATAAGAACTGTTGCATCTTTTACTGGAGAAAAGCAAGCAGTGTCTACTTATAGCAAGTTTCTTGTGGATGCATACAAATCAGGAGTTTATGAAGGTTCCATTGCCGGAGTGGGTCTAGGCACAGTCATGTTTGTTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATACAACGGTGGCACGGTGATTAATGTGATTATTGCTGTGTTAACAGCTTCCATGTCTCTTGGTCAAGCATCTCCTAGCATGAGTGCTTTTGCTGCGGGTCAGGCTGCAGCTTACAAAATGTTTCAGACAATTAAGAGGAAGCCAGAGATAGACGCTTATGATCCAAATGGAAAAATATTAGAGGATATTCAAGGTGACATAGAATTAAGGGAGGTTTATTTCAGTTATCCAGCCAGACCTGAGGAGCTGATATTCAATGGGTTTTCTCTTCATATACCAAGCAGTAGCACTACAGCTTTGGTTGGACAAAGTGGAAGTGGAAAGTCTACAGTTATCAGTTTGGTAGAAAGATTCTATGATCCGCAGGCAGGTGAAGTTCTTATTGATGGCATTAACCTGAAAGAATTTCAACTTAGGTGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCAGTGTTATTTGCATCTAGCATTAAAGAAAACATTGCATATGGAAAAGAGGGAGCAACGATTGACGAGATAAGATCTGCTACTGAACTTGCAAATGCTGCTAAGTTCATTGATAAACTGCCACAGGGATTGGACACAATGGTTGGCGAGCATGGAACTCAGTTGTCTGGTGGACAGAAGCAGCGTATCGCCATTGCAAGAGCAATCTTGAAAGATCCAAGAATTCTGCTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGATAGTGCAAGAGGCTTTGGACAGGATCATGGTCAACCGAACTACTGTTGTTGTGGCACACCGCCTGAGCACAGTAAGGAATGCTGATATGATTGCTGTTATTCATAGAGGGAAGATGGTAGAGCAAGGCACACACTCAAAATTACTCAACGATCCTGAGGGAGCATACTCTCAGCTTATACGCTTACAAGAAGTGAACAAGGTATCAGAAGAAACATCAGACCATCAAAGCAAGGGTGAACTGTCAGCAGAGTCCTTTAGACAGTCCAGTCAAAGGAGATCACTCCAAAGATCTATCAGTAAGGGATCATCTGTGGGGAATAGTAGTCGCCACTCGTTTTCAGTTTCATTTGGTTTGCCAACAGGCATTAATGTCTCTGATCCTGAGCTGGAAACCTTGCAACCTAAGGAACAAGCGCCAGAGGTTCCACTCCGGCGCCTTGCCTCCCTCAATAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTTTGGCAGCCATAGGAAATGGTACCATATTTCCAATATTTGGCGTGTTGATTTCCAGTGTCATTAAAACATTTTATGAACCGTTTGATGAGATGAAAAAGGACTCGAAGTTTTGGGCACTAATGTTTATGGTACTTGGTCTTGCATCATTACTGGTAATTCCAGCAAGGGGCTACTTCTTTTCTGTGGCTGGATGCAAATTAATCCAACGCATCAGGCTACTATGTTTTGAGAAGGTGGTCCTCATGGAGGTTGGTTGGTTTGACGAGCCTGAGAACTCAAGTGGCGCAGTTGGTGCGAGGCTCTCAGCAGATGCTGCATCTGTCCGTGCCCTTGTTGGCGACGCACTGGGACTACTAGTTCAAAACTTAGCATCTGCATTGGCAGGTTTGATTATTGCTTTCGTGGCAAGCTGGGAGTTGGCATTGATTATTCTAGTCTTGATTCCCCTAATTGGAGTAAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGTGCAGATGCGAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGGACAGTTGCTTCTTTTTGTGCTGAAGACAAGGTCATGGAACTATATAGGAAGAAATGTGAAGGCCCCATGAAAACAGGGATAAGGCAAGGGTTGATCAGCGGATCGGGATTCGGGATCTCATTTTTCTTACTCTTTTGTGTCTATGCAACGAGTTTCTATGCTGGAGCTAGACTTGTTAAGGCTGGGAAGGCAACATTCTCAGATGTTTTCCGGGTTTTCTTTGCGTTAACTATGGCAGCTATTGGAGTTTCCCAAACAAGCTCCTTTGCTCCTGACTCTAGCAAAGCCAAGTCAGCTACTGCTTCCATATTTGGAATAATTGACAAGAAGTCAAAGATAGATCCAAGTGATGAGTCTGGCAGCACACTGGATAGTGTTAAGGGTGAAATCGAGATCCGTCATGTAAGCTTCAAATATCCATCTAGGCCAGATATACAGATTTTTCGGGATCTCAGCTTGGCTATCCATTCTGGCAAGACGGTGGCCCTTGTCGGTGAAAGTGGGAGTGGGAAATCCACAGTGATTGCCTTATTGCAAAGATTTTATGATCCTGATTCAGGTGAAATTACACTTGATGGGGTAGAAGTTCGGCAATTACAGCTCAAATGGTTAAGGCAGCAAATGGGCCTTGTAAGCCAAGAGCCAGTGCTGTTCAATGACACTATCCGTGCCAATATTGCGTATGGGAAAGGAGGCAATGCAACTGAAGCAGAAATCATTGACGCAGCAGAACTAGCCAATGCTCATAAGTTCATTAGTGGCTTACAACAGGGTTATGATACTGTAGTGGGAGAGAGGGGAACCCAATTATCTGGTGGGCAGAAGCAACGAGTGGCAATTGCACGTGCTATAATTAAAAGTCCAAAGATATTGCTATTAGATGAGGCAACTAGTGCATTGGACGCAGAGTCAGAGAGAGTGGTTCAAGACGCATTAGACAAAGTTATGGTGGACAGGACCACTGTGGTCGTGGCACATCGCTTGTCTACAATAAAGAACGCAGATGTGATTGCTGTGGTGAAAAACGGAGTTATAGTGGAGAAAGGAAAGCATGATACGCTCATTAACATCAAGGAGGGATTTTACGCTTCATTGGTCCAACTTCACACAAGTGCTTCAACAGTGTGA 3861 0.4408 MGAENGADGRGNKHDDEATTSENLAESSKNGEKEEKVKKKEKPETVPFHKLFSFADSTDILLMAVGTIGAIGNGLSLPFMTLLFGQMIDSFGNNQQSTDVVKEVSKVSLKFVYLAIGSGCSAFLQVASWMVTGERQAARIRGLYLRTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLIATFIGGFVIAFVKGWLLTLVLLSTLPLLVMSGASMAIVIGMMASRGQTAYAKAAHIVEQTIGSIRTVASFTGEKQAVSTYSKFLVDAYKSGVYEGSIAGVGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQTIKRKPEIDAYDPNGKILEDIQGDIELREVYFSYPARPEELIFNGFSLHIPSSSTTALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKENIAYGKEGATIDEIRSATELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEQGTHSKLLNDPEGAYSQLIRLQEVNKVSEETSDHQSKGELSAESFRQSSQRRSLQRSISKGSSVGNSSRHSFSVSFGLPTGINVSDPELETLQPKEQAPEVPLRRLASLNKPEIPVLLIGCLAAIGNGTIFPIFGVLISSVIKTFYEPFDEMKKDSKFWALMFMVLGLASLLVIPARGYFFSVAGCKLIQRIRLLCFEKVVLMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLLVQNLASALAGLIIAFVASWELALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGLISGSGFGISFFLLFCVYATSFYAGARLVKAGKATFSDVFRVFFALTMAAIGVSQTSSFAPDSSKAKSATASIFGIIDKKSKIDPSDESGSTLDSVKGEIEIRHVSFKYPSRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEVRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIDAAELANAHKFISGLQQGYDTVVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVDRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKEGFYASLVQLHTSASTV* 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1949 1286 MobiDBLite consensus disorder prediction 628 642 - -
Dod06g1949 1286 MobiDBLite consensus disorder prediction 1 42 - -
Dod06g1949 1286 MobiDBLite consensus disorder prediction 8 42 - -
Dod06g1949 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 386 622 IPR003439 GO:0005524
Dod06g1949 1286 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
Dod06g1949 1286 MobiDBLite consensus disorder prediction 628 671 - -
Dod06g1949 1286 CDD ABC_6TM_Pgp_ABCB1_D1_like 63 347 - -
Dod06g1949 1286 Pfam ABC transporter 405 553 IPR003439 GO:0005524
Dod06g1949 1286 SMART AAA_5 413 599 IPR003593 -
Dod06g1949 1286 SMART AAA_5 1068 1241 IPR003593 -
Dod06g1949 1286 CDD ABC_MTABC3_MDL1_MDL2 1041 1279 - -
Dod06g1949 1286 Gene3D - 1031 1285 IPR027417 -
Dod06g1949 1286 SUPERFAMILY ABC transporter transmembrane region 701 1025 IPR036640 GO:0005524|GO:0016021
Dod06g1949 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1041 1278 IPR003439 GO:0005524
Dod06g1949 1286 Gene3D - 384 641 IPR027417 -
Dod06g1949 1286 ProSitePatterns ABC transporters family signature. 1181 1195 IPR017871 GO:0005524
Dod06g1949 1286 PANTHER - 3 1282 - -
Dod06g1949 1286 MobiDBLite consensus disorder prediction 643 671 - -
Dod06g1949 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod06g1949 1286 Gene3D ABC transporter type 1, transmembrane domain 109 1015 IPR036640 GO:0005524|GO:0016021
Dod06g1949 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1279 IPR027417 -
Dod06g1949 1286 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 3 1282 - -
Dod06g1949 1286 SUPERFAMILY ABC transporter transmembrane region 50 370 IPR036640 GO:0005524|GO:0016021
Dod06g1949 1286 CDD ABC_MTABC3_MDL1_MDL2 386 624 - -
Dod06g1949 1286 CDD ABC_6TM_Pgp_ABCB1_D2_like 709 1024 - -
Dod06g1949 1286 Pfam ABC transporter 1060 1209 IPR003439 GO:0005524
Dod06g1949 1286 Pfam ABC transporter transmembrane region 64 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod06g1949 1286 Pfam ABC transporter transmembrane region 719 991 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod06g1949 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 624 IPR027417 -
Dod06g1949 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 720 1006 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1949 Dod-Chr6 28955785 28963520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1949 39 1285 Calmodulin-binding Proteins AT2G36910 45.166 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1949 K05658 - gmx:100800034 2154.79