Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1933 ATGGGCAAAGCCTCTAGCTCTTCCTCCTCTTCATCTTTCAGCAGCAGCACCAACCCTGTTGTCTCAACTGCTTCCTCTCCCACACGGCGAAATACTGAAGACCTTCGCACGGATCTTAGGCTTGGACTCAGCATTTCCTCCACTCAACATGTTGGCCCTTCTGTTTCAAGGGGGCAGTGGCAACCAATCCAGCCTTCTGTAGGTAGTTCACAAGCTGCTGAAGGAAATGATTTCAGCGATCATAACAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCTATTGGCAGAAAACTCAACCTATTAGCACATGATGGGTATCAAGAGTTAGTAAAGACTCTTGAACAAATGTTCGACACTACCATTCTCTGGGGGGCTGAGATGGATGCAGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGGAGAAGGGGACCTGATTATGGTTGGGGATGTGCCGTGGGAGTTGTTCTTATCAGCTGTAAAGAGGTTAAGATCACCAGGGTTGACACATTCGGGGGTTGAAAATGCATATTTATGA 546 0.4707 MGKASSSSSSSSFSSSTNPVVSTASSPTRRNTEDLRTDLRLGLSISSTQHVGPSVSRGQWQPIQPSVGSSQAAEGNDFSDHNSFFVKVYMEGIPIGRKLNLLAHDGYQELVKTLEQMFDTTILWGAEMDAVQPERCHVLTYEDGEGDLIMVGDVPWELFLSAVKRLRSPGLTHSGVENAYL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1933 181 MobiDBLite consensus disorder prediction 1 30 - -
Dod06g1933 181 MobiDBLite consensus disorder prediction 49 74 - -
Dod06g1933 181 Pfam AUX/IAA family 76 167 IPR033389 -
Dod06g1933 181 PANTHER AUXIN-INDUCED PROTEIN 7 167 - -
Dod06g1933 181 ProSiteProfiles PB1 domain profile. 83 177 IPR000270 GO:0005515
Dod06g1933 181 Gene3D - 77 176 - -
Dod06g1933 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 167 IPR003311 GO:0005634|GO:0006355
Dod06g1933 181 SUPERFAMILY CAD & PB1 domains 78 168 - -
Dod06g1933 181 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1933 Dod-Chr6 28534351 28536025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1933 64 166 B3 DNA Binding Superfamily AT4G23980 35.922 4.12e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod06g1933 AUX_IAA 7e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1933 K14484 - gmx:100781660 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1933 06 28534351 28536025 Dod06g1933 06 28534351 28536025 ECH
Dod01g3229 01 73212071 73227128 Dod06g1933 06 28534351 28536025 PCT