Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1929 ATGGCTGAGAACATGATTGAATCCACCCGAACAGGGACGACAAGGAGCTCCTCCTATCTAACCTCCATTTTTGATGACAATGAATACCTCGAGCTGGTATGGAAAAACGGTCAAGTTGTTGTGCATGGAGGTTCATCAAGGCCCACTCAGATGAATACTCCCTCGCGCATTGGGTATTCACATGGAGATTCTCACCAAAGCAGTTATCAAAATTCTTTTCAGCTTGATTTGCTATACTCCAAAAGCAAGAGTAGCTGCAGTTATAAGCTTGAAGATGGGTGTGTAATATCCAGACCAGTGAGAGAATCGAAGCTCACTACTGCGGCAGCTCATCAGGCAGCAACTACTGACAATGGTTGCTCACGCACATCTTCCAAACAGGATTGTTTACCTTCAGACACTTTCAAGAAACCAAGAATGGATTCGAGCCAAACAACGGCATCAAACTCACTGATACAAAACTTGGGAAAGGTGATCAATTTCTCCAACCCTTTAGGGCCTTCAGTGCTTGCTAAATCCACTCACAAGGTAAAAAGTGCAAATGAGGATACAGCAATAATGAAGGTTGCAGAAGTAGCAGCTGGTGGTGCTGCTACTTGCAGCAAAGCTACTGGTGATTCCGCAGTGATTGACTCATCTAGAGGATCACGTGCTCTCATAGGACCTCAAGGGAAAAACCCTTTAGTTTCTGATGCATCAAAACCAGTATGTTTTGTTGCAAGGAGTCAGGAACCGCTTCGTTGGAAGCAGGCTGAAGCTGTTGGTCATAACAGTGTCCTTAGAACAAAGAGAAAGGCTGATGCTAACTTTTGTAATGAACCCTTGCTTGAATCTTCTTCCGTATGCTCGCTTGGAGCCTCGAACAACCCAGACATTTGTAGCAGGAAACAAGCGGGAACTGATGTCTCAACTCGTATAAGTGATAATGATGAAGATACAGAAGATGCTTTGAAGGAAAAGGATGCTCGGGAGGGCAAAGTCAAGAGAAGCAGGAATGCTGAGACTCATAATTTGTCTGAAAGGAAGCGAAGAGATAAGATCAACAAGAAGATGCGCGTATTGAAAGAGCTCATACCCAATTGTAATAAGGTGGACAAAGCTTCAATGCTTGATGATGCCATTGAATATCTTAAGACCCTACAACTTCAATTACAGATTATGTCAATGGGTACGGGGCTTTCCTTGCCTCTTATGATGTTACCTACTGGCCCTCTTCATCATATGATCAACACACCCCATTTACCTCAGTTAATGGGAGCTGGGATGGGTTTCAGGCCAGGCGGTGCAGGCATCCCTCCTTGCAACCTGCCTCAGTTCTCCATTCCACCACAGCCTTGTAGTATCACTGACAACAGAGTTCGGATGTTTGGTTTCCCCAACCAATTGTTGCCCATGCCAATGTCTCATGCACCTTTCATTCCCATGGTTGGAAAGCCTTCTACACAACCACTTCAAGCAACCTGCACTGCTACCAACCTTGCAGAAAATCTAGCTTCTGCTCAGCAGTTATCAACTCTAAAGGTCTCGGGCCCCAGTAACTCGCTTTGA 1548 0.4509 MAENMIESTRTGTTRSSSYLTSIFDDNEYLELVWKNGQVVVHGGSSRPTQMNTPSRIGYSHGDSHQSSYQNSFQLDLLYSKSKSSCSYKLEDGCVISRPVRESKLTTAAAHQAATTDNGCSRTSSKQDCLPSDTFKKPRMDSSQTTASNSLIQNLGKVINFSNPLGPSVLAKSTHKVKSANEDTAIMKVAEVAAGGAATCSKATGDSAVIDSSRGSRALIGPQGKNPLVSDASKPVCFVARSQEPLRWKQAEAVGHNSVLRTKRKADANFCNEPLLESSSVCSLGASNNPDICSRKQAGTDVSTRISDNDEDTEDALKEKDAREGKVKRSRNAETHNLSERKRRDKINKKMRVLKELIPNCNKVDKASMLDDAIEYLKTLQLQLQIMSMGTGLSLPLMMLPTGPLHHMINTPHLPQLMGAGMGFRPGGAGIPPCNLPQFSIPPQPCSITDNRVRMFGFPNQLLPMPMSHAPFIPMVGKPSTQPLQATCTATNLAENLASAQQLSTLKVSGPSNSL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1929 515 Gene3D - 326 388 IPR036638 GO:0046983
Dod06g1929 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 390 IPR036638 GO:0046983
Dod06g1929 515 Pfam Helix-loop-helix DNA-binding domain 334 381 IPR011598 GO:0046983
Dod06g1929 515 MobiDBLite consensus disorder prediction 293 346 - -
Dod06g1929 515 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 512 - -
Dod06g1929 515 PANTHER TRANSCRIPTION FACTOR PIF3 1 512 IPR044273 GO:0003700|GO:0006355
Dod06g1929 515 SMART finulus 337 386 IPR011598 GO:0046983
Dod06g1929 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Dod06g1929 515 MobiDBLite consensus disorder prediction 305 344 - -
Dod06g1929 515 CDD bHLH_AtPIF_like 331 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1929 Dod-Chr6 28450709 28454935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1929 273 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 47.126 1.48e-34 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g1929 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1929 K12126 - gmx:100818543 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3230 01 73247694 73250565 Dod06g1929 06 28450709 28454935 PCT