Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1925 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTAGGAAGGGTCTCTGGTCACCTGAGGAGGATGAAAAACTTATGAGGCATATTACTAAGTATGGACATGGATGTTGGAGTTCTGTGCCTAAGCAAACTGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATAAACTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCACAAGAAGAAGAAAATCTCATCATTGAGCTTCATGCAGTATTAGGGAATAGATGGTCTCAAATTGCGGCACAATTGCCAGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAATTGAAGCAAAGGGGTATAGACCCTGTCACCCATAAATCCACTGTCTGA 393 0.4224 MGRHSCCYKQKLRKGLWSPEEDEKLMRHITKYGHGCWSSVPKQTGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRGIDPVTHKSTV* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1925 130 Gene3D - 11 67 - -
Dod06g1925 130 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod06g1925 130 PANTHER MYB DOMAIN PROTEIN 55 1 128 - -
Dod06g1925 130 CDD SANT 17 61 IPR001005 -
Dod06g1925 130 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod06g1925 130 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod06g1925 130 PANTHER MYB DOMAIN PROTEIN 55 1 128 - -
Dod06g1925 130 SMART sant 13 63 IPR001005 -
Dod06g1925 130 SMART sant 66 114 IPR001005 -
Dod06g1925 130 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod06g1925 130 CDD SANT 69 109 IPR001005 -
Dod06g1925 130 Gene3D - 69 129 - -
Dod06g1925 130 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod06g1925 130 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod06g1925 130 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1925 Dod-Chr6 28266713 28267507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1925 1 127 MYB Transcription Factor Family AT4G01680 94.488 2.69e-89 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod06g1925 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1925 K09422 - gmx:100819449 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1925 06 28266713 28267507 Dod01g3232 01 73303857 73306003 ECH
Dod06g1925 06 28266713 28267507 Dod06g1925 06 28266713 28267507 ECH
Dod01g3232 01 73303857 73306003 Dod06g1925 06 28266713 28267507 PCT