Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1920 ATGGCATCTTCATTCTCAGCGCAGTTGCTGCAAAGTCAGATCCAACTTCCTCGTTTTCATCGTGTCCAGGGGAATTTTAGCCAAGATGTGTCGGGAGTTTGGATGCCGTGTGTGGTCGGTAGCAGTATCAGATCAGGGCTTGGTTACAGCAAAACATTGGCTTCAAGATTTCATTATGCTGCAAGGTTTGCTGTTATGCAGCAGTCTGAAGCAAAATCAATCGGATATAGGAGAATGACATGTGTTAATGCTAAGGAAAATGTTCTAGACCTGCAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTAGAAATTGCGGATGAACCTGCAGGGAGGATTGTTTTGGGCTTATTTGGAGAGGTTGTTCCTAAAACAGTTGAGAATTTTCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGAATGCTACTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACTGAGGGAGATGGAACTGGTGGAATCAGTATCTATGGTCCTCGCTTTGAAGATGAGGATTTTTCCTTGAAGCATGTTGGTCCTGGGGTTTTGAGCATGGCAAATGCTGGTCCTAATACCAACGGTAGTCAGTTTTTTATTTGCACTGTACAGGTGAGATTCACATTTCACACTGTCCCTTTTTCTCCTTAA 672 0.4286 MASSFSAQLLQSQIQLPRFHRVQGNFSQDVSGVWMPCVVGSSIRSGLGYSKTLASRFHYAARFAVMQQSEAKSIGYRRMTCVNAKENVLDLQAKVTNKCFFDVEIADEPAGRIVLGLFGEVVPKTVENFRALCTGEKGYGYKECYFHRIIKDFMIQGGDFTEGDGTGGISIYGPRFEDEDFSLKHVGPGVLSMANAGPNTNGSQFFICTVQVRFTFHTVPFSP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1920 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Dod06g1920 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Dod06g1920 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Dod06g1920 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Dod06g1920 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 53 213 - -
Dod06g1920 223 Gene3D - 87 219 IPR029000 -
Dod06g1920 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 223 IPR002130 GO:0000413|GO:0003755
Dod06g1920 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 53 213 - -
Dod06g1920 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 211 IPR002130 GO:0000413|GO:0003755
Dod06g1920 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Dod06g1920 223 SUPERFAMILY Cyclophilin-like 91 213 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1920 Dod-Chr6 28141390 28143806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1920 111 207 U-box Gene Family AT5G67530 54.082 6.42e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1920 K03768 - gmx:100526955 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1920 06 28141390 28143806 Dod06g1920 06 28141390 28143806 ECH