Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1909 ATGGCTTCCATCACAGGCGTTTCTTCCGTATGCCAAACCCACGCTCTCGAACTCTACAAAAGAGCAACCACCACAGCGACAGCAGCGCCTGCGGGTTCTTCTACCGCCGCCGTTTCGCTCCCGTCGCTGTCGTTCGAAAGCAAGTCGCGCTTGAATGCCGTTTTAAGAGCAGCTCACCACAACGGCAGTGCCAGCAAGCGCAGGGTCGGTTTTTCTGGTTCTGCTGTTGCGACCCCGAACACCAACGTACTCAGCGAAGAAGCGTTCAAGGGTTTCGGCTTGGACGGTGTTGGAGATGATGATGGAGAAGTTGGTTATGACTTTGAGAGTGAGGGTCTTTCTCCTCCTCCTCCTCATTCTGCTGTAAGCGAAGACGAGCTCGATGTTTCGAAGCTGGGGTTGCCTTCGCGGCTCGTGGACTCGCTCCAGAAGCGTGGAATCACTAGCCTTTTCCCCATTCAGAGAGCTGTGTTAGTGCCTGCGCTAGAAGGCAGAGATATTATTGCTCGTGCAAAGACTGGGACCGGGAAGACGTTAGCATTTGGGATTCCAATTATTAAAGGCCTCACTGATGATGAGCAAAGTTCCTTCAGGCGGTCCAGTCGTCTTCCTAAAGGATTAGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTTGAAAAAGAGATAAAAGAATCTGCACCTTACCTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAAAGTGCTCTGTCACGTGGTGTTGATGTGGTGGTTGGAACACCTGGTAGAATAATTGACTTAATAAATGGGAACAGCCTTAAATTGAGTGAAGTTCAGTATTTGGTCCTCGATGAAGCTGATCGGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGGTCCCATCTGAGCGGCAGACCATGCTTTTCTCTGCAACCATGCCGGGTTGGGTGAAGAAATTGTCAAGAAAATATTTGAAGAATCCTTTGACAATTGATTTGGTCGGTGATGAAGAAGAAAAGCTTGCTGAGGGGATCAAACTCTATGCTATGTCAGCCACTGCCACTTCAAAGCGGACAGTTCTTTCTGATCTTATAACTGTCTATGCAAAGGGTGGGAAGACTATTGTTTTCACTCAGACAAAAAAAGATGCTGATGAAGTATCATTATCATTAACAAATAGTATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAAAGAACATTGAATGGCTTTCGGCAAGGGAAATTCACAGTTCTCGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTATGAGCTTCCTAATGATCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAAGAAGGCACTGCCATTTTGATGTACACCAGTAGCCAAAGGAGAACAGTTAGATCCCTAGAGCGTGATGTGGGCTGCAAATTTGAATTTATTAGTCCACCAGCTGTAGGAGAGATTTTGGAGGCATCTGCCGCTCAAGTCGTAGCTGCACTTGGTAGAGTTCATCCCGAGTCTGTTGAGTTTTTCACTCCAACTGCACAAAAAATGGTTGAAGAACAAGGGGCAAGTGCCCTTGCTGCTGCATTGGCACAGCTGAGTGGATTCTCTCAACCTCCATCATCCCGGTCTTTAATCAACCATGAACAGGGGTGGATTACATTGCAACTGACTCGAGATGCTGAGAATTCTAAAAGATTTCTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGACGAAGTTGGAAAAATATATTTAATTGCAGATGAAAGGGTGCAAGGAGCTGTTTTTGATCTTCCAGAGGACATCGCTAAAGAGTTACTCAATAAGGATGTTCCAGCTGGAAACACTATTTCCAAGATCACCAAGTTACCTGCTTTGCAAGATGATGGACCTTCAAGTGACTACTATGGGAAATTTTCTGATAGAGATCGCAGTAGTAACCGAAGAGGTTCTAGGGATCAGAGAGGATTTAAAACCTCAAGGGGTTGGGAAGGGGGCCGAGACTCTGATGATGATTTTGGTGATTCATTTGGAAGAGGGAGTAGACGTTTTAAATCTGGCAACAACAGGTCTCGAATGGGGAAAAGCAGTGGAAATGACTGGCTGATTGGCAACAACAACAGGTCTCGAATGGGGAAAAGCAGTGGGGATGACTGGTTGATTGGAGGTAGACAATCAAGCAGAGGCGCTGGCTATGGAGGGGCCTGTTTTAATTGTGGAGAATCTGGGCATCGGGCATCAGATTGTCCCAAAAAGCGAGATTTCTTTTAG 2355 0.4616 MASITGVSSVCQTHALELYKRATTTATAAPAGSSTAAVSLPSLSFESKSRLNAVLRAAHHNGSASKRRVGFSGSAVATPNTNVLSEEAFKGFGLDGVGDDDGEVGYDFESEGLSPPPPHSAVSEDELDVSKLGLPSRLVDSLQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTDDEQSSFRRSSRLPKGLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADRMLAVGFEEDVEVILEKVPSERQTMLFSATMPGWVKKLSRKYLKNPLTIDLVGDEEEKLAEGIKLYAMSATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFISPPAVGEILEASAAQVVAALGRVHPESVEFFTPTAQKMVEEQGASALAAALAQLSGFSQPPSSRSLINHEQGWITLQLTRDAENSKRFLSARSVTGFLSDVYSPAADEVGKIYLIADERVQGAVFDLPEDIAKELLNKDVPAGNTISKITKLPALQDDGPSSDYYGKFSDRDRSSNRRGSRDQRGFKTSRGWEGGRDSDDDFGDSFGRGSRRFKSGNNRSRMGKSSGNDWLIGNNNRSRMGKSSGDDWLIGGRQSSRGAGYGGACFNCGESGHRASDCPKKRDFF* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1909 784 CDD DEADc 138 335 - -
Dod06g1909 784 Gene3D - 128 338 IPR027417 -
Dod06g1909 784 SMART ultradead3 146 351 IPR014001 -
Dod06g1909 784 Pfam Zinc knuckle 763 779 IPR001878 GO:0003676|GO:0008270
Dod06g1909 784 MobiDBLite consensus disorder prediction 104 123 - -
Dod06g1909 784 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Dod06g1909 784 SMART c2hcfinal6 763 779 IPR001878 GO:0003676|GO:0008270
Dod06g1909 784 Gene3D - 752 782 - -
Dod06g1909 784 MobiDBLite consensus disorder prediction 650 750 - -
Dod06g1909 784 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 508 IPR001650 -
Dod06g1909 784 PANTHER - 38 759 - -
Dod06g1909 784 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 334 IPR014001 -
Dod06g1909 784 Pfam GUCT (NUC152) domain 555 655 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dod06g1909 784 SUPERFAMILY Retrovirus zinc finger-like domains 751 782 IPR036875 GO:0003676|GO:0008270
Dod06g1909 784 MobiDBLite consensus disorder prediction 718 741 - -
Dod06g1909 784 SMART helicmild6 388 468 IPR001650 -
Dod06g1909 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 489 IPR027417 -
Dod06g1909 784 Pfam Helicase conserved C-terminal domain 362 468 IPR001650 -
Dod06g1909 784 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 38 759 - -
Dod06g1909 784 ProSiteProfiles Zinc finger CCHC-type profile. 764 779 IPR001878 GO:0003676|GO:0008270
Dod06g1909 784 MobiDBLite consensus disorder prediction 663 707 - -
Dod06g1909 784 Gene3D - 351 544 IPR027417 -
Dod06g1909 784 CDD SF2_C_DEAD 360 477 - -
Dod06g1909 784 CDD GUCT_Hera 562 642 - -
Dod06g1909 784 Pfam DEAD/DEAH box helicase 151 323 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1909 Dod-Chr6 27972129 27980229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1909 153 508 Eukaryotic Initiation Factors Gene Family AT1G72730 37.534 1.14e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1909 - - vra:106757668 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3246 01 73520079 73525140 Dod06g1909 06 27972129 27980229 ECH
Dod06g1909 06 27972129 27980229 Dod06g1909 06 27972129 27980229 ECH
Dod01g3246 01 73520079 73525140 Dod06g1909 06 27972129 27980229 PCT