Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1895 ATGCAGCATGCGCCAATTATTGATATTCCTTCTTCCTCAAGTGATTTTTCTAGCTTAAAGATGCAGAAGCTAGATCCAAGTTTGCCTAGCGATGCTTCAACCGTGATGAATTTTTCCCATTTTGCAAGGCCTGCTGCCATTATGAGAGCTAATCTTCAGAACATTGGCTTGAAGTCCGGTTTGTCTTCAGCAAGATCAGAAGATATGGGAAATATGAACAAAGGTGCTACTGCAACTAACAGAAACCCTCCTGAATCAGCTCTTGCTAATTCAAGTGGGGAATGTCCAAAGGGTCCTACTGGGAACTTCCAGAAGGCTGTGGAGCAATCCAAGGGTGATTTGAAACCACTGGAGCCAAAATCTCTTGAACAGAATGCTGTCGTGTCTAATGAGTTGGACCCTGCTTGCAAAGATAAAGCCATTAAGGTTGATCAAACTTCCAACCAAATTCATGGGGAAAGTGGGGCTAAAGGACAGATGGCTTCTGACAAAAGTTTGGAGCCAGCAGTAGCCTCTTCCTCTGTTGGCTCTGGTGATTGTGCGGGCAGAGGTTCAGACGAACCAAACCAACATTTGAAGCGAAAAAATCGAGACACTGAGGACTCTGAATGCCATAGTGATGATGTTGAGGAAGAATCAGTGGGTATTAAAAAGGCAACTGCTGGGAGAGGAGCTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCACTACAAGAACTTATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCTATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTCTGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTCCAGGAATGCAGCACATGCATGCACCACACATGGCTCCTTTTTCACCTATGGGCATGAGGATGCAAATGGGGTTGAGTATGGCTTATGGGATGGGTATGCCTGACATGAATGGTGTGTCTTCTAGATTCCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCATCTCCCTGTTGCACATATGATGGGCAGATCAAATCCTCATGGGTTTGGGCTTCCAGGTCAGGGATTTCCCGTGCTACTGCCACGTGCTCCTGTATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCGTCAGCTCCGGGACTACATGCCTGCGGAACATCAGGGCTCATTCAAGCTGTGGATCCAGCTTCAACAGCTGGCTTACAAGACACAATACCAAATGCAGACCCACAAGTTAAGCAAAGTACCGGTGACTGTGACTCAACAAGTCAGATGCCTACCCAGTGTGAAGCAGCAACTGTTGGATTTGATCAGTCAGCTTTGGTGCACAATAGCGGCCGTCATGCCTCCGAGGTTAACGGACAGTGGAACCTGCGGATCCTGGGGAAGATGACCACGTGA 1470 0.4653 MQHAPIIDIPSSSSDFSSLKMQKLDPSLPSDASTVMNFSHFARPAAIMRANLQNIGLKSGLSSARSEDMGNMNKGATATNRNPPESALANSSGECPKGPTGNFQKAVEQSKGDLKPLEPKSLEQNAVVSNELDPACKDKAIKVDQTSNQIHGESGAKGQMASDKSLEPAVASSSVGSGDCAGRGSDEPNQHLKRKNRDTEDSECHSDDVEEESVGIKKATAGRGATGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQILSMGAGLYMPPMMLPPGMQHMHAPHMAPFSPMGMRMQMGLSMAYGMGMPDMNGVSSRFPMIQVPQMQGTHLPVAHMMGRSNPHGFGLPGQGFPVLLPRAPVFPFSGGPLMNSSAPGLHACGTSGLIQAVDPASTAGLQDTIPNADPQVKQSTGDCDSTSQMPTQCEAATVGFDQSALVHNSGRHASEVNGQWNLRILGKMTT* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1895 489 MobiDBLite consensus disorder prediction 63 130 - -
Dod06g1895 489 MobiDBLite consensus disorder prediction 186 217 - -
Dod06g1895 489 PANTHER TRANSCRIPTION FACTOR PIF3 8 449 IPR044273 GO:0003700|GO:0006355
Dod06g1895 489 SMART finulus 238 287 IPR011598 GO:0046983
Dod06g1895 489 Pfam Helix-loop-helix DNA-binding domain 236 282 IPR011598 GO:0046983
Dod06g1895 489 CDD bHLH_AtPIF_like 232 294 - -
Dod06g1895 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Dod06g1895 489 Gene3D - 227 289 IPR036638 GO:0046983
Dod06g1895 489 MobiDBLite consensus disorder prediction 144 240 - -
Dod06g1895 489 PANTHER TRANSCRIPTION FACTOR PIF3 8 449 - -
Dod06g1895 489 MobiDBLite consensus disorder prediction 63 107 - -
Dod06g1895 489 MobiDBLite consensus disorder prediction 1 29 - -
Dod06g1895 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 294 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1895 Dod-Chr6 27518763 27521767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1895 8 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 42.340 6.60e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g1895 HLH 4.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1895 K12126 - gmx:100794974 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1895 06 27518763 27521767 Dod06g1895 06 27518763 27521767 ECH