Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1874 ATGCCGGTGCGGAAGTACTATTGTGATTATTGTGGTAAGCAGTTCCAAGACACACCAGCAGATCGTAAACGACATGAACGAGGCATTCAACACCAACAGGCCAAAGCTCGCTGGTATGATTCTTTCAAAAATGAACAACATTTTTCTAATGGATCATCATCCCAAGGAATGCCTAAACCTCTTTGTTACCATTTTGTTAACAAGGGATTTTGTCACTTTGGTGAATCTTGCAAATATTTTCATCCCAATTCCAACAATATATCACAACCATCAACGATAAGCACACCATACAATATATCACAACCATCAACGATAAGCGCACCAAACAATATACCACAGCCATCAATGATCGTCACACCCAATAACATACTGCAAAGATCAATGATTACACCTATTATGACAGGGAATGCGGTGCAAAATATGATGGGTATGTCTTGGGACAATCTGCCTCCATCGTTGCAGCCTCCACCTGAGGGTGGATATCCCTCTCTTCCCTTTGTGGACTGGGGATAG 513 0.4191 MPVRKYYCDYCGKQFQDTPADRKRHERGIQHQQAKARWYDSFKNEQHFSNGSSSQGMPKPLCYHFVNKGFCHFGESCKYFHPNSNNISQPSTISTPYNISQPSTISAPNNIPQPSMIVTPNNILQRSMITPIMTGNAVQNMMGMSWDNLPPSLQPPPEGGYPSLPFVDWG* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1874 170 Gene3D - 48 113 - -
Dod06g1874 170 Gene3D Classic Zinc Finger 3 47 - -
Dod06g1874 170 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Dod06g1874 170 ProSiteProfiles Zinc finger C3H1-type profile. 56 84 IPR000571 GO:0046872
Dod06g1874 170 SUPERFAMILY CCCH zinc finger 60 84 IPR036855 GO:0046872
Dod06g1874 170 SUPERFAMILY beta-beta-alpha zinc fingers 4 50 IPR036236 -
Dod06g1874 170 MobiDBLite consensus disorder prediction 149 170 - -
Dod06g1874 170 PANTHER NUCLEASE-RELATED 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1874 Dod-Chr6 27077667 27081260 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod06g1874 zf-U1 1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1874 K13152 - vvi:104881371 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1874 06 27077667 27081260 Dod06g1874 06 27077667 27081260 ECH