Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1873 ATGCCAATGCGAAAGTACTACTGTGATTATTGTGATAAGCAGTTCCAAGACACGCCAGCAGATCGTAAACGACATGAACGAGGCATTCAACACCAACAAGCCAAAGCCCGTTGGTACGATTCCTTCAAACAAGAACAACAACAACATCTTTCTAATGCACCATTGTCTCAAGGAAGGAATCAACTTCTTTGTTATCATTTTGTCAACACGGGATTTTGTCGTTTTGGTGAATCCTGCAAATATTTACACCCAAATGCCAACAATGTACCACAATCAACAATGATAAGCACACCCTACAACATACAACAATCATCAATGATAAGTGCATCCAACATGATACCACAATTGTCAACGATAAGTCCATCCAATAACATACCACACCCATCAATGATAAACACATCTATTACAACAGGGACTGCAGTACAAAATTTTAAGGGGATATCTTGGGACAATTTGCCTCCATCATTGCAGCCTCCACCAGAGGGTGGATATCCCTCTCTTCCCTTTGTGGACTGGGGATAG 522 0.4119 MPMRKYYCDYCDKQFQDTPADRKRHERGIQHQQAKARWYDSFKQEQQQHLSNAPLSQGRNQLLCYHFVNTGFCRFGESCKYLHPNANNVPQSTMISTPYNIQQSSMISASNMIPQLSTISPSNNIPHPSMINTSITTGTAVQNFKGISWDNLPPSLQPPPEGGYPSLPFVDWG* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1873 173 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 84 IPR000571 GO:0046872
Dod06g1873 173 SUPERFAMILY CCCH zinc finger 62 85 IPR036855 GO:0046872
Dod06g1873 173 PANTHER NUCLEASE-RELATED 1 173 - -
Dod06g1873 173 Pfam U1 zinc finger 3 39 IPR013085 GO:0008270
Dod06g1873 173 Gene3D - 55 111 - -
Dod06g1873 173 ProSiteProfiles Zinc finger C3H1-type profile. 58 86 IPR000571 GO:0046872
Dod06g1873 173 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Dod06g1873 173 SMART c3hfinal6 59 85 IPR000571 GO:0046872
Dod06g1873 173 MobiDBLite consensus disorder prediction 151 173 - -
Dod06g1873 173 Gene3D Classic Zinc Finger 3 54 - -
Dod06g1873 173 SUPERFAMILY beta-beta-alpha zinc fingers 3 52 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1873 Dod-Chr6 27061764 27066282 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod06g1873 zf-U1 6.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1873 K13152 - gmx:100527203 175.252