Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1853 ATGCACCGCAAGGAACCGGGGATGGCTCCATCACCTTCACATGCCCAAGTGGAGGGCTTTCAAAGCCTTGTTAGCACCAAGGCAAGTGCTGTCACTGTTGCTGGTGAGTGTTTTGGAAAACAGTACTGTTCTCTTGATGACTCGGACAGCTTCTATATCAAACTCAGTGAGTTGTTGGAGTCCTCTGGACTGAGCCTAATTTTCAATGTCCGAGAAACATTGCTGGATTTGTACCTAGTTTACTTGGAAGTGACCAGAAGGGGAGGATATCATCAGGTTGGTCGAGAAAAGAAATGGGGTGAAGTTGTCTCTGCCCTGAAATTGGAAGGCAGTATTGTAAAGCTATCTGCTCAAGTTGAAAAGCTCTACGCACATCTTCTTTACCAATTCGAGCAATTGTACTTCTGCAGGGTTCCTGCAAAGCAAGCTGTAGCTAGCAGCAGCACAGGTCTACTCAAGAGGAAGCGGAATACACTGGCCAGTTACTTCTCTTGCCAAATGACAGAAGGAGCTGGGATTGTAGAAGAGCCAGTGCTTCTACCGGCACCCTCGAATGATAAAGAAAGGAAGAAGAAACGGCGAGGTGCTCCGCGCGGACAAAGGAATGCATACCAGATTTTCCTCAAGCAGGAATGTGCTCGATTGAGAAGTTGTAATCAGGCCTCAGATGGCACAGCAATCCTGCGCATGGCTATTGATGCATGGAGAAAGATGTCTGAAATGGAGAAACAGCCATATGTGGAGGAGAGCAAGAAGAACAAGGAGGAAAAACTTAAGGAATCAATGATTGCTGAAAATAAACAGCACAGCATGCAAAATGCCAGGGAAGAGAAGATGCCTAGTCTTTGTGGTGGTGGTGGTGACTACCATGTAACTCCGCAACCAGAGGCAGATAACTACCCTTTTAACAAAGCAGCAATCAGCCTAGCTCTTAAAATGACCGGAAAAGCTCCCAAGGATTCCTTGTTCCTAGTTGACTGGGATCACTAG 990 0.4667 MHRKEPGMAPSPSHAQVEGFQSLVSTKASAVTVAGECFGKQYCSLDDSDSFYIKLSELLESSGLSLIFNVRETLLDLYLVYLEVTRRGGYHQVGREKKWGEVVSALKLEGSIVKLSAQVEKLYAHLLYQFEQLYFCRVPAKQAVASSSTGLLKRKRNTLASYFSCQMTEGAGIVEEPVLLPAPSNDKERKKKRRGAPRGQRNAYQIFLKQECARLRSCNQASDGTAILRMAIDAWRKMSEMEKQPYVEESKKNKEEKLKESMIAENKQHSMQNAREEKMPSLCGGGGDYHVTPQPEADNYPFNKAAISLALKMTGKAPKDSLFLVDWDH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1853 329 MobiDBLite consensus disorder prediction 178 200 - -
Dod06g1853 329 ProSiteProfiles ARID domain profile. 45 135 IPR001606 GO:0003677
Dod06g1853 329 Coils Coil 247 267 - -
Dod06g1853 329 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 197 265 IPR009071 -
Dod06g1853 329 SMART ARID_2 42 131 - -
Dod06g1853 329 SMART bright_3 46 136 IPR001606 GO:0003677
Dod06g1853 329 SUPERFAMILY HMG-box 181 256 IPR036910 -
Dod06g1853 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 29 321 - -
Dod06g1853 329 Pfam ARID/BRIGHT DNA binding domain 48 131 IPR001606 GO:0003677
Dod06g1853 329 Gene3D - 40 150 IPR036431 GO:0003677
Dod06g1853 329 Gene3D High mobility group box domain 182 280 IPR036910 -
Dod06g1853 329 Pfam HMG-box domain 197 262 IPR009071 -
Dod06g1853 329 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 29 321 - -
Dod06g1853 329 SUPERFAMILY ARID-like 48 135 IPR036431 GO:0003677
Dod06g1853 329 SMART hmgende2 196 268 IPR009071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1853 11 162 ARID Transcription Factor Family AT1G76110 28.662 1.04e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod06g1853 ARID 3.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1853 - - var:108325455 324.324