Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1852 ATGGAGCCTGTTCCTCTAGCAACTATATGGCGTCTTATTCTTCTTGCTATCCATCTTCTCTCAGTTTGTAGTGCACAGGACTGTGGTAACAAGGAAATTGCAAGTATCATCACTGTTGATCAGTCGGGCAAAACAAAATTCAGTACGATCCAAGCTGCCATTGATTCAATAGCTGAAAATAGTAATCAATGGGTGAAAATTCACATCAATCCTGGCACATACACGGAGAAGGTCCGAATCCCCATTGAAAAGCCATGCATCTTTTTGGAAGGCCAAGGCAACGATGTCACAACCATTACGTACAATGACCACCAAAAGACAGATGAAAGTGCTACATTCACATCCTCTGCAAACAATGTGATTGCAAAGGACATTACTTTCAAGAACTCCTTCAATGTGGCAGGAGTGTTGAGTTTGCAACACGGGAAAGCAAGAGGCCAAGTGGTCCCAGCATTGGCAGCAAGAATATATGGAGACAAATCTGCCTTTTATAACTGTAGATTCATAGGCCGTCAAGATAGCTTGTGGGATGTGCAAGGTCGTCATTACTTCAAAAAATGCATTATTGAAGGTGCTGTGGACTTCATATTTGGTAATGGTCAGTCCTATTACGAGGATTGTGTGATCAACGCGACCTCCTCGGGTTTTATGACAGCCCAGTCGCGCAGATCAAGTAATGACCCAGGTGGTTTTGTGTTCAAAGGGGGCTCTGTGGTTGGCAGTGTCGGAGTAAGATCGTGGTTAGGGAGAGCTTGGGGTCCTTATTCCAGAGTTATATTCTATAGAACAAACTTGGGTTCTGTAGTTGAACCTCGAGGATGGAATGCTTGGCATTACAGAACACACGAGAGCAATCTCTCATATGCTGAAGTTAACTGTACAGGACCAGGGGCCAATATTTCTAAACGCGTCCCATGGATGAAGAAGTTCAGTGCTAACCAGCTACTTCAATTTTCGAGATCATCGTTCATCGACCAAGATCGGTGGATTGCAAAGTCACCATTGGAATAA 1011 0.4392 MEPVPLATIWRLILLAIHLLSVCSAQDCGNKEIASIITVDQSGKTKFSTIQAAIDSIAENSNQWVKIHINPGTYTEKVRIPIEKPCIFLEGQGNDVTTITYNDHQKTDESATFTSSANNVIAKDITFKNSFNVAGVLSLQHGKARGQVVPALAARIYGDKSAFYNCRFIGRQDSLWDVQGRHYFKKCIIEGAVDFIFGNGQSYYEDCVINATSSGFMTAQSRRSSNDPGGFVFKGGSVVGSVGVRSWLGRAWGPYSRVIFYRTNLGSVVEPRGWNAWHYRTHESNLSYAEVNCTGPGANISKRVPWMKKFSANQLLQFSRSSFIDQDRWIAKSPLE* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1852 336 Gene3D - 30 335 IPR012334 -
Dod06g1852 336 ProSitePatterns Pectinesterase signature 2. 189 198 IPR033131 -
Dod06g1852 336 PANTHER PECTINESTERASE 4 334 - -
Dod06g1852 336 Pfam Pectinesterase 37 326 IPR000070 GO:0030599|GO:0042545
Dod06g1852 336 SUPERFAMILY Pectin lyase-like 34 331 IPR011050 -
Dod06g1852 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1852 Dod-Chr6 26654695 26656575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1852 30 335 Carbohydrate Esterase AT1G05310 40.625 3.28e-73 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1852 - - gmx:100800737 398.667