Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1849 ATGTTGGATTCATCGTCTGGAAGAAATAATGATCCATTCAGTCATGTACGGAGTAGTTTTGTTTCTGAAGATGTCCCTGATGCTGCATCAGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTGTCACCTACAGCTGTAGCATATGCCAATAGAGCTATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGATTGTACGGAGGCCTTAAATCTTGACGATCGTTACATAAAAGCATACTCAAGACGAGCAACATCTAGAAAAGAACTTGGAAAATTTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAGTCAAAAAACAGTATGCTGATGTCAAGTCTTTGTATGAGAAGGCAGTTCTTCATAAAGTATCTGGAGCTCTGAGAAGCACTGGACAGGGAACTCAAAAAGTAGGGAAATCAGACACACAAGTTAACGGAGGCAGCATCCACCCTGTTTCAAATGTCACTCAAATATCAGGGGCAGCTGAAGTTCATAAACACACAAGGGATAATGACTCAAAAAATCCTGCTAAGGAATCACACTTTTTAGAGGAGGTAGATAGCAAAGATATCAGATCGAGAAGCAGGACTCAAGGACAAGAAGCAGGTGTTTCTAAGGAAGGTTCTAGTGCAAGCGACATTGTGCAGCATGCTAAGAGAAATCAAAGAGTTGGTGAGCAGGAAATGAAACCATCTATCCAGCAGCTTGCTTCTCGTGCAGCCTCTCTAGCAATGGCTGAAGCTGCAAAGAACATAGCGCCACCAACTACAGCATATCAGTTTGAGGTCTCTTGGAGAGGGTTTTCAGGTGACCGTGCATTGCAGACTCACCTATTAAAGGCCATATCTCCTCATGAGTTGCCGAAAATATTCAAAAATGCCTTGTCCTCTGCCCTGCTAATTGATATTGTCAAGTGTGTTGCATCCCTTTTTGCTGAAGACAAGGATCTAGCTGTAAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATCATAATGTGTCTTCCGTCAACAGATAAGGATGATTTGCGCAAAATCTGGGATGAAGTGTTCTGCTGCAAGGCAACTCCAATGGAGTATGCAGAGATTCTGGATGACCTGCGATCAAAATACTGCCTTGGACAGTGA 1218 0.4245 MLDSSSGRNNDPFSHVRSSFVSEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATSRKELGKFKESMEDAEFALRLEPNNQEVKKQYADVKSLYEKAVLHKVSGALRSTGQGTQKVGKSDTQVNGGSIHPVSNVTQISGAAEVHKHTRDNDSKNPAKESHFLEEVDSKDIRSRSRTQGQEAGVSKEGSSASDIVQHAKRNQRVGEQEMKPSIQQLASRAASLAMAEAAKNIAPPTTAYQFEVSWRGFSGDRALQTHLLKAISPHELPKIFKNALSSALLIDIVKCVASLFAEDKDLAVSYMEHLTKVPRFDMIIMCLPSTDKDDLRKIWDEVFCCKATPMEYAEILDDLRSKYCLGQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1849 405 SMART tpr_5 95 128 IPR019734 GO:0005515
Dod06g1849 405 SMART tpr_5 28 61 IPR019734 GO:0005515
Dod06g1849 405 SMART tpr_5 62 94 IPR019734 GO:0005515
Dod06g1849 405 MobiDBLite consensus disorder prediction 156 257 - -
Dod06g1849 405 MobiDBLite consensus disorder prediction 156 188 - -
Dod06g1849 405 ProSiteProfiles TPR repeat profile. 28 61 IPR019734 GO:0005515
Dod06g1849 405 ProSiteProfiles TPR repeat profile. 95 128 IPR019734 GO:0005515
Dod06g1849 405 MobiDBLite consensus disorder prediction 224 244 - -
Dod06g1849 405 Gene3D Tetratricopeptide repeat domain 21 162 IPR011990 GO:0005515
Dod06g1849 405 PANTHER OS05G0129900 PROTEIN 8 404 - -
Dod06g1849 405 Pfam Potential Monad-binding region of RPAP3 281 370 IPR025986 -
Dod06g1849 405 SUPERFAMILY TPR-like 25 141 IPR011990 GO:0005515
Dod06g1849 405 MobiDBLite consensus disorder prediction 190 223 - -
Dod06g1849 405 Pfam Tetratricopeptide repeat 61 91 IPR001440 GO:0005515
Dod06g1849 405 Pfam Tetratricopeptide repeat 32 60 IPR001440 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1849 32 124 U-box Gene Family AT3G07370 34.043 4.87e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1849 K23002 - gmx:100784528 569.311