Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1847 ATGGAAGATGTTTACAAGTTGAACAGTCTTGTATCTTGTAACCCAGAGGAAGTTGTTAGAGCTGGTGGCAGCGTTAACGTTTCTGCTTCTTCTGCTTCTCATGAATTGCATCTGGCTCCACTGGCTAGCAACAACTGCCTTCAGCTTGAAGCCGGGTCGGATAATGTCTCGGATCGGGTTATCAAGTCCCAGATCGCCAATCACCCTCTTTACCCAGATTTAGTGTCTGCATACATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTGGCGTCTCTTCTTGAAGACATAAGCCGTGAAAGCCACCCTATGGATGCTTCCCGTGAGATAGGAGACGATCCTGAGCTTGACGAGTTCATGGAATCATACTGCGATGTTCTTCATAGATACAAGGAGGAGCTGTCCAAGCCTTTCAACGAAGCGACCTTGTTCTTGTGTAGCATCGAATCAGAACTCAGCAACCTTTGTATGGGAACAATAACAACAATGCCTTCGGATAACAATCGCTCCGATGAGGCAGCAGGGACTTCGGAGGATGAGTTGAATTGTGAGAAGGTGGAAGCAGTTCAAGGCCATGAAGCTTTTGGCACGCGTCTTGATGATCAAGGTCTTAAAGAAATGCTACTTCGCAAGTATAGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTGAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTGATGAACTGGTGGAACGCTCACTATAGATGGCCTTATCCTACGGAGGAGGAGAAATTGATGCTGTCAGAACTGACTGGACTCGATCAGAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCGTCGGCAGATATGCGATTTGGCGTCATGGAGGGTATAAGTGGTGGTGGCATATTCGGACCTATGTAA 924 0.4632 MEDVYKLNSLVSCNPEEVVRAGGSVNVSASSASHELHLAPLASNNCLQLEAGSDNVSDRVIKSQIANHPLYPDLVSAYIECQKVGAPPELASLLEDISRESHPMDASREIGDDPELDEFMESYCDVLHRYKEELSKPFNEATLFLCSIESELSNLCMGTITTMPSDNNRSDEAAGTSEDELNCEKVEAVQGHEAFGTRLDDQGLKEMLLRKYSGYLSSLRKEFLKKRKKGKLPKDARMALMNWWNAHYRWPYPTEEEKLMLSELTGLDQKQINNWFINQRKRHWKPSADMRFGVMEGISGGGIFGPM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1847 307 Pfam ELK domain 204 224 IPR005539 GO:0003677
Dod06g1847 307 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Dod06g1847 307 Pfam KNOX2 domain 110 156 IPR005541 GO:0003677|GO:0005634
Dod06g1847 307 SMART ELK_2 203 224 IPR005539 GO:0003677
Dod06g1847 307 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Dod06g1847 307 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Dod06g1847 307 SMART KNOX1_2 59 103 IPR005540 GO:0003677|GO:0005634
Dod06g1847 307 Gene3D - 221 292 - -
Dod06g1847 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 297 - -
Dod06g1847 307 Pfam KNOX1 domain 61 102 IPR005540 GO:0003677|GO:0005634
Dod06g1847 307 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 297 - -
Dod06g1847 307 CDD homeodomain 235 287 IPR001356 GO:0003677
Dod06g1847 307 SUPERFAMILY Homeodomain-like 225 295 IPR009057 -
Dod06g1847 307 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Dod06g1847 307 SMART HOX_1 225 290 IPR001356 GO:0003677
Dod06g1847 307 SMART KNOX2_2 106 157 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1847 Dod-Chr6 26525775 26533739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1847 24 300 Homeobox Transcription Factor Family AT1G23380 51.590 3.77e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod06g1847 KNOX2 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1847 - - gmx:100786114 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1847 06 26525775 26533739 Dod06g1847 06 26525775 26533739 ECH