Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1823 ATGGTCGGGAATTTCATCACCGTGGAGCACTGCGGCGATGATTTTATCGCAGCGCTGGCGGAGGCGGTGGGAGACACCGAAGAATGGGATGATTTGCAGGAGTTGGAGTCGCAGGCTTGTGGAACATTGGCTCAGGTTCTCGATAAGAGTACTGCTGCTGTTGGTGAGGTTTGTTACATTGATGTTATTGACGATTCGCCTGAGCCGCGGAAGCAGCAGAGGAAAGTAGTGGAGTTGGATTCTAGCGAGGACGACGATGATGGAGTGGAGTTTGGTGTTTTGAGGGGAAGAGAAAGATGCGTGCCTCCTGGTGGTTCTGCAAAATCTGTGGATTGCAGAAGTGGCATTACTCAAGATTCAGTTTTATCAACTTCCAGCAAAGTACAAGCCTTCTTAGCATCAAAGGATGGAAACAGTACTCTCACCTACGAAGAATTGCAGGCACTAGACGATATTGAATTGGCAAATGTTGTTATCTTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCATGCAAAGTAGCTTTGGCAAAGAAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCACTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGGGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGATCAGATAATCACGCTAAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAACTACTTCCCAAGCTACAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAGCTCCTGTATGTGACTCCCGAGAGAATTGTTGGCAACCAATCATTTGTTGAGACTCTAAAATGCATGCATCGGAAGGGACAGCTGGCAGGATTTGTTGTTGACGAGGCACACTGTGTTAGCCAATGGGGGCATGATTTCCGGCCTGATTATCGGGCATTAGGATCTCTTAAGCAAAACTTCCCTGATGTACCAGTCATGGCATTGACTGCAACTGCAACCCACTCAGTTCGTCAGGACATCTTAAATGCTTTAAGAATCCCCCGTGCGCTCGTTCTCGAGAGAAGCTTTGACAGACCAAACTTGAAGTATGAAGTGATTGTAAAGACAAAGGAACCACTGAAGCAGCTGGGACAGCTACTAGTGGATCGCTTCAGAAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGCGTCGAGGTCTCAAAAATTTTGAATGAGACATGTAAAATTAAAACTGTTTATTACCATGCTGGGTTGGCTGCCCGTCAGAGAGTTGCTGTTCAAAAGAAATGGCATGAAGGACAGGTCCATATTGTTTGCGCAACTATTGCTTTTGGAATGGGGATAGACAAAGCTGATGTGCGCTTTGTCATCCATAATACAATGTCAAAATCAGTCGAAAGTTATTATCAAGAATCAGGAAGAGCCGGAAGGGATAATCTTCCAGCAGTTTGCATTGCTTTATACCAGAAGAAGGATTTCAGTAGAGTTGTATGCATGATAAGAAATGGCCAAGGATATAAAAAGGAAAGCTTCAAGACAGCAATGGCTCAAGCGAAAAAGATGCAAGAGTACTGTGAACTAAAGGTTGAATGTCGGAGACAAACTTTACTCGAGCACTTTGGAGAATCTTTTGACAGAAAAGGCTGCAAGTATGGATCTAACCCATGTGATAACTGTCTCAAGACTGCACTATGA 1701 0.438 MVGNFITVEHCGDDFIAALAEAVGDTEEWDDLQELESQACGTLAQVLDKSTAAVGEVCYIDVIDDSPEPRKQQRKVVELDSSEDDDDGVEFGVLRGRERCVPPGGSAKSVDCRSGITQDSVLSTSSKVQAFLASKDGNSTLTYEELQALDDIELANVVIFGNRTFRPLQHQACKVALAKKDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQATAVLQELRKDKPSCKLLYVTPERIVGNQSFVETLKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRALGSLKQNFPDVPVMALTATATHSVRQDILNALRIPRALVLERSFDRPNLKYEVIVKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKILNETCKIKTVYYHAGLAARQRVAVQKKWHEGQVHIVCATIAFGMGIDKADVRFVIHNTMSKSVESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQEYCELKVECRRQTLLEHFGESFDRKGCKYGSNPCDNCLKTAL* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1823 566 CDD SF2_C_RecQ 357 490 - -
Dod06g1823 566 SMART ultradead3 161 365 IPR014001 -
Dod06g1823 566 Gene3D - 357 565 IPR027417 -
Dod06g1823 566 PANTHER BLOOM SYNDROME PROTEIN 4 564 - -
Dod06g1823 566 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 564 - -
Dod06g1823 566 SMART helicmild6 399 481 IPR001650 -
Dod06g1823 566 Pfam DEAD/DEAH box helicase 167 335 IPR011545 GO:0003676|GO:0005524
Dod06g1823 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 349 IPR014001 -
Dod06g1823 566 Gene3D - 125 356 IPR027417 -
Dod06g1823 566 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 288 297 IPR002464 -
Dod06g1823 566 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 159 564 IPR004589 GO:0004386|GO:0006310
Dod06g1823 566 Pfam RecQ zinc-binding 493 562 IPR032284 -
Dod06g1823 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 529 IPR001650 -
Dod06g1823 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 502 IPR027417 -
Dod06g1823 566 CDD DEXHc_RecQ 159 356 - -
Dod06g1823 566 Pfam Helicase conserved C-terminal domain 374 480 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1823 Dod-Chr6 26192027 26199894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1823 290 479 Eukaryotic Initiation Factors Gene Family AT5G11170 27.551 2.65e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1823 K10899 - gmx:100806070 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1823 06 26192027 26199894 Dod06g1823 06 26192027 26199894 ECH