Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1815 ATGGGAAGGGGAGGGAAGGTTGGTGGTAAAGGCAGTTTCAGAAAAGGGGCTCGGTCAAAGGAGGCCAGTTCTGATGATTCGGATGAGGACTACGTGGTTTCAGATGAGGAATATTCCTCTTCTTTAGATGGATTTGTGACAGAAGAGGAGGAGGAGGAGCGTCCCAGAGTGAGAAATTTCATTAGATCCAAGACAAATAATGGCATTTGTGGTTGGCGGGGAAATGCAAGTAAAACCTCACGAAAGAGGGCGAGGATTATATATGAAAAAAAAGAAGGAGGAGGAGAAGAGGAGGAGGAGGATAAAGATGAGGATGAGGATGAGGAGGAAGTGCTGGAGGAGGAAGAGGACGAATACGAGGAGGAAGAGGATGACTATGAGGAGGAAGTGCAGGAGGATGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGACGAGGAGGAGGAAGAGGAAATTCGAGGAATGAGAAATTTCAGTAGATCAAAGGCCAAAAATGGTGTTTGTGGTCAGCGCAGGAATGCTAGTAAGACCTCAACAAAAAGGAGTGCATATGCAGAACAACTAGAAGAAGAGGAGGAGGAGGAAATTCAAGAAACAAGGAATTTCAGTAGATCAAAGGCCAGAAATGGTGTTTGCAGTGAGCGAAAGAATCCAAGTAAGACCTCAACAAAGAGGAGATGGATTACATATGCAGAACCACTAGAAGAAGATGAAGAGGATGAGGAGGATGACAACGAGAAGAACGAGGGAGTGGAGGAAGATGAGAAGGGCAAGGGAGAGGAGGAAGATGAGAATGACAAGGAGGAGGAGGAGTATGAGGAAGAGAAAGTGGAGACGGAAGAAGATGAGTGGAAAGAGGAAGAGGAGGGAGATGGAGATGAAGAGGATGAGGATGAGGATTTTGATTATGATGATGAGTTTACACCAGAGGAAGATGACTCTTCAGATGAGGAAGAAGAAATGAGGGGAAGAGGGAAGAAAAATATTGGCATGACAATGGGCAAGAAGGTTTTACAGAAAAGGGCCTCTGTGATTCCTCTGGGAGGCCGAAAAAAGCGGAGTTCTAGAGCATCAAAGAGGCCACTGAGAAACAAAAGGAGAAAGAATGGTTGGATAAGGAGGAAATTAAAATGTGACGATCAAGATGATTTTATAGATAATGGCCCAACCATCAGGACCACAAGTAGGGAAAAACGGGGCCAGAAGAGGAGAAGGGTTCTTCTTTCAGATTCAGATTGTAGGTCTTCTGGATCACCGGATGTTGTGCATACCATCTCTGAAGAAGAGAGAGAACAGGTAAGAGAAGCCAAGGAATTGTGTGGAGGCTTGAGAATCAACTTGAGGAGTTCATCCCTTCTAATAAAAAATGAAGAGTATGGAGTCCATGAAGATCTGCACCAGCTGCAGAAACCTCTGGGTCGGCAGGGCAAGGAAAAGACAGAAGAACCTCAAGGGAGAAAGGGAAAGGAAAAGGTGGAGGATTTAAAAAATGAGGTGGCAAAGCAGGTCTGTGGAATTTGTCTGACTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAATTGCTGTACTCATTATTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCCCTGTGCAAGCAGAGATTCACAACAATCAGTAAACCAGCACGTTCAACAACAGGGATTGACTTAAGAGATGTGGTGATTGAAGTCCCGGAACGAGACCAGGTTTATCAGCCCTCCGAAGAAGAACTCAGGAGTTATTTTGATCCATATGAGCAAGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGGCCTCATGTTATTGTGCGATATATGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCTGAAGTTCAAGAATGTGTGGCTGAACAAACAGTGACAATCCAGAGCCTGCCTGTTAGAGTACCTGCTATTCATGTACGAGAAAGTATAGACCTCAACTTGGTGTCTTCGGCCCGCGTAGCTTTTAGTCATGGATTTGGGCATCTTTCATCTTCTAGATTTACTGGCAGAAGTGTTGAAGGAGCTTCTCCTGTATCCGGAGGGGCGCCAACTTTATCGCAGAGACGCTGGATACACCGTCAAATTCAGCAGCTTCTTTCAACAGATAGAATGACTTCAACAACTGGCAGAACTAATGCCATTGCAGCTACCAGTTCAGCTAGTAACTTGTACAACTCTCAAATTGATCATAGTAGGCAAAGAGCCACTGAACATGCAATGACTCAGGATGTGGGAACATCATACCATACATTTTTCGAGGAGACATTATATAATAATAATACCTCTCCATTGATACAGAATGGGGCACTTTGGCCTGGTCTTGTGGGGACAACCCCGATTTTAGATTGTGAGCAAATCCATCAGTTCAGCAGATCAAACATGGTTATTGATGGTAGCTTGTCCCCTGGGGTCAGAGAAGAGAGTAACTTTCACAGTGCAAAAGAGCAGTTGCAGTCAATGGTTAAAAGCCACTTGAAGAGCATGTCTCAGAATCTTGATTTAGGCCACAACACTTTCAAGGACATTGCAAGGAGTTGCATGCGCACAATACTAGCAGCTTGTGGTCTTGAGCCCAAGAAGAGTGAGGTTTGCTCTGTGGCTCCCCCGACCGTCTGTTTGCATATCGATCTAAATGCCGGCGGGCAAACAAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAGGAGGATTTTGGACACAAGAATTTCGCCACAATGGTTAAGATTAGGTCTTTAG 2865 0.4489 MGRGGKVGGKGSFRKGARSKEASSDDSDEDYVVSDEEYSSSLDGFVTEEEEEERPRVRNFIRSKTNNGICGWRGNASKTSRKRARIIYEKKEGGGEEEEEDKDEDEDEEEVLEEEEDEYEEEEDDYEEEVQEDEEEEEEEEEEDEEEEEEIRGMRNFSRSKAKNGVCGQRRNASKTSTKRSAYAEQLEEEEEEEIQETRNFSRSKARNGVCSERKNPSKTSTKRRWITYAEPLEEDEEDEEDDNEKNEGVEEDEKGKGEEEDENDKEEEEYEEEKVETEEDEWKEEEEGDGDEEDEDEDFDYDDEFTPEEDDSSDEEEEMRGRGKKNIGMTMGKKVLQKRASVIPLGGRKKRSSRASKRPLRNKRRKNGWIRRKLKCDDQDDFIDNGPTIRTTSREKRGQKRRRVLLSDSDCRSSGSPDVVHTISEEEREQVREAKELCGGLRINLRSSSLLIKNEEYGVHEDLHQLQKPLGRQGKEKTEEPQGRKGKEKVEDLKNEVAKQVCGICLTEENKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFTTISKPARSTTGIDLRDVVIEVPERDQVYQPSEEELRSYFDPYEQVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSEVQECVAEQTVTIQSLPVRVPAIHVRESIDLNLVSSARVAFSHGFGHLSSSRFTGRSVEGASPVSGGAPTLSQRRWIHRQIQQLLSTDRMTSTTGRTNAIAATSSASNLYNSQIDHSRQRATEHAMTQDVGTSYHTFFEETLYNNNTSPLIQNGALWPGLVGTTPILDCEQIHQFSRSNMVIDGSLSPGVREESNFHSAKEQLQSMVKSHLKSMSQNLDLGHNTFKDIARSCMRTILAACGLEPKKSEVCSVAPPTVCLHIDLNAGGQTSLIKGCCSSCFDSFVGDVVRRILDTRISPQWLRLGL* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1815 954 CDD RING-HC_Topors 503 545 - -
Dod06g1815 954 ProSitePatterns Zinc finger RING-type signature. 522 531 IPR017907 -
Dod06g1815 954 ProSiteProfiles Zinc finger RING-type profile. 503 545 IPR001841 -
Dod06g1815 954 SMART PHD_3 595 640 IPR001965 -
Dod06g1815 954 PANTHER F18C1.6 PROTEIN 224 943 - -
Dod06g1815 954 SUPERFAMILY FYVE/PHD zinc finger 565 641 IPR011011 -
Dod06g1815 954 SMART ring_2 503 544 IPR001841 -
Dod06g1815 954 MobiDBLite consensus disorder prediction 1 363 - -
Dod06g1815 954 ProSiteProfiles Zinc finger PHD-type profile. 593 642 IPR019787 -
Dod06g1815 954 Pfam PHD-finger 595 641 IPR019787 -
Dod06g1815 954 Coils Coil 173 204 - -
Dod06g1815 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 645 IPR013083 -
Dod06g1815 954 MobiDBLite consensus disorder prediction 465 491 - -
Dod06g1815 954 MobiDBLite consensus disorder prediction 96 150 - -
Dod06g1815 954 Coils Coil 95 152 - -
Dod06g1815 954 Coils Coil 233 288 - -
Dod06g1815 954 SUPERFAMILY RING/U-box 502 551 - -
Dod06g1815 954 MobiDBLite consensus disorder prediction 232 317 - -
Dod06g1815 954 MobiDBLite consensus disorder prediction 388 422 - -
Dod06g1815 954 PANTHER F18C1.6 PROTEIN 224 943 - -
Dod06g1815 954 MobiDBLite consensus disorder prediction 162 181 - -
Dod06g1815 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 563 IPR013083 -
Dod06g1815 954 Pfam Ring finger domain 502 545 IPR001841 -
Dod06g1815 954 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1815 Dod-Chr6 26104105 26107985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1815 590 639 C2H2 Transcription Factor Family AT3G01460 46.154 1.18e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod06g1815 PHD 4.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1815 - - gmx:100791422 986.097