Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1789 ATGGGTAGGCGATCTAGTCGTACAATTTATGTTGGCAATCTTCCGGGCGATATTCGCTTGAGAGAAGTAGAGGATATTTTCTACAAGTTTGGTCCTATTGTTGACATTGATTTGAAGATCCCTCCAAGACCACCAGGCTATGCCTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCCATTTACTATCGAGATGGTTATGACTTTGATGGTTTTCGATTACGAGTTGAACTTGCACATGGTGGACGGGGTTATTCATCATCAGTAGACCGTTACAGTGCTTATAGTGGTAGCAGTAGTAGCCGTGGAGTTTCCAGGCGTTCTGACTATCGTGTTCTGGTCACAGGATTACCTCCTTCTGCTTCGTGGCAAGACCTGAAAGATCACATGCGCAGGGCTGGTGATGTGTGTTTTTCTCAAGTCTTCCGTGAGCGTGGTGGCATGACTGGGATAGTGGATTATACCAATTATGACGATATGAAATATGCTATCAGGAAACTTGACGACTCAGAATTCAGAAATGCCTTTTCTCGGTCATACATATGTGTGAGGGAATATGATCGACGCAGTTATTCTAGGAGTCCCAGTTATGATTCAAGGAGGAGCTATTCGAGAAGCCTCAGCCGCAGTCCTTATGTATCACGAGGTCGAAGCCGTAGTCGAAGTCCTAGTTATAGCGACAGGAGCAGAAGTTTGTCTCCAAAAGCAAAGCACTATCGGCGTTCATTCTCAAGATCCCGGTCAAGATCCAGATCTCCATATTCATCTCCTCGATCTCGCAACACTTACAGCCGCAGCCAAAGTCCAAGGAGCATGTAA 822 0.4574 MGRRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYYRDGYDFDGFRLRVELAHGGRGYSSSVDRYSAYSGSSSSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYICVREYDRRSYSRSPSYDSRRSYSRSLSRSPYVSRGRSRSRSPSYSDRSRSLSPKAKHYRRSFSRSRSRSRSPYSSPRSRNTYSRSQSPRSM* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1789 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Dod06g1789 273 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 265 - -
Dod06g1789 273 MobiDBLite consensus disorder prediction 193 273 - -
Dod06g1789 273 SUPERFAMILY RNA-binding domain, RBD 5 177 IPR035979 GO:0003676
Dod06g1789 273 CDD RRM1_SF2_plant_like 8 79 - -
Dod06g1789 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Dod06g1789 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Dod06g1789 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Dod06g1789 273 Gene3D - 2 110 IPR012677 -
Dod06g1789 273 CDD RRM2_SF2_plant_like 111 186 - -
Dod06g1789 273 Gene3D - 111 187 IPR012677 -
Dod06g1789 273 SMART rrm1_1 112 181 IPR000504 GO:0003723
Dod06g1789 273 SMART rrm1_1 8 78 IPR000504 GO:0003723
Dod06g1789 273 MobiDBLite consensus disorder prediction 249 273 - -
Dod06g1789 273 MobiDBLite consensus disorder prediction 197 231 - -
Dod06g1789 273 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1789 Dod-Chr6 24704808 24712915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1789 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 6.32e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1789 K12890 - gmx:100794282 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1789 06 24704808 24712915 Dod06g1789 06 24704808 24712915 ECH