Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1780 ATGGGTGTTGGTCCTGGTGTGATGCCGGGGCCTGTTGTAGCTGACTCATTGGAAGGTTTGGATGTTGCTTCTGATTGGGAGAACAGAGCTAGCAGTCTCTTGGAGAAGCATTTCGGGTTTTCGTCCTTGAAGAGTTTTCAGAAGGAAGCCCTCAGTGCATGGGTGGCTCATAAGGACTGCCTTGTCTTGGCTGCGACAGGATCCGGGAAATCTCTGTGCTTTCAGATACCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCGCCCTTAATAAGCCTGATGCATGATCAGTGCTTAAAGCTAGCAAGACATGGGGTCAGTGCTTGCTTTCTTGGGTCTGGGCAACTTGACAAAACCGTTGAACAGAAAGCAATGAGAGGCATGTACAGTATAATATATGTTTGCCCAGAGACAGTCCTAAGATTGATTGAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTCGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGTCCAGACTACAGCCGACTTTCTGTGCTGAGGGAAAATTTCAGTACCAGCAAACTGAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACGCACAGAGTTCGAGAAGACATTTTAAAATCATTATGCATGTCAAAAGAAACAATTGTTGTGCTTACATCCTTTTTTCGATCTAATTTACGCTTCATGGTGAAGCATAGTGGAACATCAGCAGCTTCTTATGGAAAAGATTTTCATGAATTGATTAAAGCATATGGTAGAAAGCTAAATAATGAAAATAAAAAGGCTTTCATCTCAAAGGATTCAGAGGATGTTTCCAGTAGCTCTGGTGCTAGTAGAATATCTGATATAGATTTTGTTTGTCCTTCTGATCTGGATGACGCCCAAGATGATTATGATGATAGAGATACTAATGTAGTGCAGTCAGGAAACGCAGATAATTTTATAAAGGGAAAAGAATTGTCCGTTGAGTTCCTCGAAAATGACAATGATGTCTGTCAAAGTGTGGATGACTGGGATGTTTCCTGTGGTGAATTTTGTGTACAGCCTCCTCTCAAGGAATGGAAGTCATCTGAGGTAATTGATCCACCCAAGGAAGCAGAAGGAACTCTTGAAATGCTAAAAGAACCTATGGAACAAGGACCGGCAATCATATATGTACCCACCAGAAAAGAAACACTGAGAATTGCGAAGTATCTGTGTAAATTTGGCGTGAAGGCTGCTGCTTATAATGCTGCGCTGCCCAAAGCACATCTAAGAAGGGTTCACAAAGAGTTTCATGAAAATACTATAGAGGTTGTTGTTGCAACAATAGCGTTTGGCATGGGGATTGACAAACCGAATGTCAGAAGAATCATCCATTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGGAAAGTGGCAGATTGCATTCTATTTGCAAACCTAGCAAGAATTCCATCACTTTTGCCAAGTCGTAGAAGTGAAGAGCAGACAAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCCTGTTGTCGTGCAAAGACGCTTGTGGAGTACTTCGGAGAAGATTTCAGTCATAGGAAGTGCCTCTTATGCGATGTGTGTGTTGATGGACCACCTCAAAAGCATAATATGAAAGAAGAGGCTTGTAAATTACTACAAACCATAGCTGCCCATTATGCAGGTAGCTATTCCATGGATTGCTCCTATGATGATGATATACATTTTGAGTCCGAAGATAGAAGACTTGGAGAGAGGTCATGTCTTAAGAAGTTTGTTGGAAAGATAAGGGAGCAGTCTCAAAAGTTTCTAACCACTGATATATTATGGTGGAGAGGTCTGGCTCGGATTTTGGAAGCTAAAGGATACATCAAGGAGGGAGATGACAAGACCCATGTTCAGATAAAATATCCAGAGCCAACTAAATTGGGATTGGAATTTATTCAGTCCATGAGTGAGCAAGCTTTCTTTGCTTACCCTGAGGCAGATATGTTACTTGCAATGAAAACTCACAAACCAATGAAACCATATTCATCGTTCTCCGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTGGAAAGAATGCAACTTGATAGAAAGCCGCAGACGCCGCAAAGTCCCAAAAAGCAACGGAAGAGAAGAGCCAATAAAGTGAAACCTGATCTGAGGACTTCCCGAGGAAGACTGGAAGCAAAACTCGCAAAATATAAGTGA 2298 0.4252 MGVGPGVMPGPVVADSLEGLDVASDWENRASSLLEKHFGFSSLKSFQKEALSAWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLARHGVSACFLGSGQLDKTVEQKAMRGMYSIIYVCPETVLRLIEPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYSRLSVLRENFSTSKLKSLKFDIPLMALTATATHRVREDILKSLCMSKETIVVLTSFFRSNLRFMVKHSGTSAASYGKDFHELIKAYGRKLNNENKKAFISKDSEDVSSSSGASRISDIDFVCPSDLDDAQDDYDDRDTNVVQSGNADNFIKGKELSVEFLENDNDVCQSVDDWDVSCGEFCVQPPLKEWKSSEVIDPPKEAEGTLEMLKEPMEQGPAIIYVPTRKETLRIAKYLCKFGVKAAAYNAALPKAHLRRVHKEFHENTIEVVVATIAFGMGIDKPNVRRIIHYGWPQSLEAYYQEAGRAGRDGKVADCILFANLARIPSLLPSRRSEEQTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSHRKCLLCDVCVDGPPQKHNMKEEACKLLQTIAAHYAGSYSMDCSYDDDIHFESEDRRLGERSCLKKFVGKIREQSQKFLTTDILWWRGLARILEAKGYIKEGDDKTHVQIKYPEPTKLGLEFIQSMSEQAFFAYPEADMLLAMKTHKPMKPYSSFSEWGKGWADPEIRRQRLERMQLDRKPQTPQSPKKQRKRRANKVKPDLRTSRGRLEAKLAKYK* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1780 765 MobiDBLite consensus disorder prediction 721 765 - -
Dod06g1780 765 Pfam RecQ zinc-binding 508 558 IPR032284 -
Dod06g1780 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 498 IPR027417 -
Dod06g1780 765 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 33 248 IPR004589 GO:0004386|GO:0006310
Dod06g1780 765 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 525 IPR001650 -
Dod06g1780 765 Coils Coil 754 765 - -
Dod06g1780 765 Pfam Helicase conserved C-terminal domain 383 486 IPR001650 -
Dod06g1780 765 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Dod06g1780 765 Pfam DEAD/DEAH box helicase 46 213 IPR011545 GO:0003676|GO:0005524
Dod06g1780 765 SMART helicmild6 406 487 IPR001650 -
Dod06g1780 765 MobiDBLite consensus disorder prediction 748 765 - -
Dod06g1780 765 Gene3D - 499 679 IPR036388 -
Dod06g1780 765 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 20 754 - -
Dod06g1780 765 SMART ultradead3 39 244 IPR014001 -
Dod06g1780 765 CDD DEXHc_RecQ 32 234 - -
Dod06g1780 765 PANTHER DNA HELICASE RECQ FAMILY MEMBER 20 754 - -
Dod06g1780 765 Gene3D - 16 235 IPR027417 -
Dod06g1780 765 Gene3D - 369 495 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1780 Dod-Chr6 24566462 24572156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1780 378 496 Eukaryotic Initiation Factors Gene Family AT5G11170 26.050 1.37e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1780 K10900 - gmx:100793222 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1780 06 24566462 24572156 Dod06g1780 06 24566462 24572156 ECH