Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod06g1771 | ATGGCAGCGGAAACGAAGCAAAACGCATCGAAGGAAACCGTGCAGCAGTACGAAGAAGCCGCAAGCGACGACAAGAGCTTCGAGGAGCTCGGAGTGGACGCTCGTCTCGTTCGTGCCTTACTCAAGAAAGGAATCGACAAACCCACCCCAATTCAGAGCGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCAAAGACCGGTTCTGGGAAGACCTTTGCTTACCTTCTCCCTATGCTTCAGAAGCTGTTCACTGGTAATGTTGATAGGAACAAGCTTGCGCCCAATGCTTTTGTTCTTGTCCCAACTCGCGAGCTCTGTCAACAGTTGTATACGGAGGTCTTGTCGCTCATTGAGTTGTGCAGAGTTCAGCTGAAGGTCGTGCAATTGAATAGCAATATGCAAGCATCTGACCTGAGGGCAGCACTGACTGGACCCCCTGATGTTTTGATCTCAACGCCTGCTTGCATTGCAAAGTGCTTGTCCAGTGGCGTACTTCTACCGGCATCCGTTAATGGTTCGCTTGAAACTCTGGTTCTTGATGAGGCAGATCTTCTACTATCATATGGGTATGAAAATGATATAAAATCTTTTACACCTCACATACCCAGAAGTTGCCAGTGTCTCCTTATGTCCGCAACATCAAGCGCTGATGTTGACAAACTGAAGAAGTTAATTCTACACAACCCCTTTATTTTGACTTTGCCTGAAGTGGGAAACCAAAAGGATGATGTCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCAAGTCCTGCCAGTGATAAGTTGATTTACATCCTAGCTGTGTTGAAGTTGGAGTTGGTCCAGAAGAAAGTTCTGATATTCACTAATACAATAGACATGAGTTTCAGACTGAAATTATTCCTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTTGAGGAGTTCAATGCAGGTCTGTTTGATTATCTGATAGCAGCTGATGTCACTCAGTCAAGGGAGAAGGGTGAAGCACCTAAGGAGAGCAATGTTGGATCACGAAAATCTAGAAAGCATGCTAAGCTAAAATTGGATTCTGAGTTTGGAGTAGTTAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGACGGACAGGAAGAGCATACAGTTCTGGTGCTTCTATCTCTCTGGTTTCTCCAGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAGGACAAAGGCTCAACCACAATTGCTGAGTTTCCCTTCCTCACGAAGAATGCAGTTGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTGACTAAAATTGCTGTCAGAGAATCACGAGCCCGGGATTTGAGGAATGAAATGCTGAACTCTGAAAAGTTGAAGGCCCACTTTGAAAGTAATCCAAGAGACTTAGATCTATTGAAACATGACAAAGTTTTGAGCAAGAATGCCCCTCCTTCGCATCTACGTGATGTGCCTGAGTACCTATTAGACAAGACAACCCAAGAGGCTAGGGAAATGATCAAACTTGCTAGGGATGCAATTGGAAATAATAATCGCCGCAGGGGATCTAAGAGAAAATTAAGAAAAGGTGGAGACCCTCTGAAGGCTATCTCTGCTGCGGTATCAAAAAGACAGCACAAAGGTGGTATGAAGACTGGTGCAAGCCATAACAGTGGCGGTGATAGACGAAAACACAAAAAGATGAAGGCTACTTGA | 1812 | 0.4404 | MAAETKQNASKETVQQYEEAASDDKSFEELGVDARLVRALLKKGIDKPTPIQSVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFTGNVDRNKLAPNAFVLVPTRELCQQLYTEVLSLIELCRVQLKVVQLNSNMQASDLRAALTGPPDVLISTPACIAKCLSSGVLLPASVNGSLETLVLDEADLLLSYGYENDIKSFTPHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNQKDDVIPKNVQQFWISSPASDKLIYILAVLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIAADVTQSREKGEAPKESNVGSRKSRKHAKLKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYSSGASISLVSPDEMDTLEEIRSFVGDDEDKGSTTIAEFPFLTKNAVESLRYRAEDVAKSVTKIAVRESRARDLRNEMLNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPSHLRDVPEYLLDKTTQEAREMIKLARDAIGNNNRRRGSKRKLRKGGDPLKAISAAVSKRQHKGGMKTGASHNSGGDRRKHKKMKAT* | 604 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod06g1771 | 603 | MobiDBLite | consensus disorder prediction | 544 | 603 | - | - | |
| Dod06g1771 | 603 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX56-RELATED | 11 | 535 | - | - | |
| Dod06g1771 | 603 | Pfam | Helicase conserved C-terminal domain | 265 | 408 | IPR001650 | - | |
| Dod06g1771 | 603 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 23 | 238 | IPR027417 | - | |
| Dod06g1771 | 603 | Pfam | DEAD/DEAH box helicase | 49 | 226 | IPR011545 | GO:0003676|GO:0005524 | |
| Dod06g1771 | 603 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Dod06g1771 | 603 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 56 | 237 | IPR014001 | - | |
| Dod06g1771 | 603 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 266 | 454 | IPR001650 | - | |
| Dod06g1771 | 603 | SMART | ultradead3 | 44 | 257 | IPR014001 | - | |
| Dod06g1771 | 603 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Dod06g1771 | 603 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 25 | 53 | IPR014014 | GO:0003724 | |
| Dod06g1771 | 603 | CDD | DEADc_DDX56 | 32 | 239 | - | - | |
| Dod06g1771 | 603 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 249 | 433 | IPR027417 | - | |
| Dod06g1771 | 603 | Gene3D | - | 1 | 239 | IPR027417 | - | |
| Dod06g1771 | 603 | SMART | helicmild6 | 294 | 408 | IPR001650 | - | |
| Dod06g1771 | 603 | PANTHER | RNA HELICASE | 11 | 535 | - | - | |
| Dod06g1771 | 603 | Gene3D | - | 241 | 447 | IPR027417 | - | |
| Dod06g1771 | 603 | CDD | SF2_C_DEAD | 254 | 417 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod06g1771 | Dod-Chr6 | 24449397 | 24460169 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod06g1771 | 26 | 448 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 25.532 | 2.67e-35 | 135 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod06g1771 | K14810 | - | gmx:100800749 | 960.674 |