Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1770 ATGGATCAAGCGCGATCCTCGTCGGGCAACAACATCGGCGAGGACAATGTGGGAATCCCCGACGACCTGCGGTGCAAGAGGTCGGACGGGAAGCAGTGGCGGTGCACGGCCATGTCGATGCCGGACAAGACGGTTTGCGAGAAGCACTACATCCAGGCCAAGAAGAGGGCCGCCAATTCCGCCATGAGGGCCAACCTCAAGAAGGCCAAGAGGAAGTCCCACGCCGCAGCCGATTCCGACACCAAGAGCGACGACTTCGACCTCCCGCTCTCCTCCGCCATCAAGCTCGCCGACCCCAGCTCCGGCGGCAGCAGGTTCTTGGATAAGGTCTCCAAGAACCAGTTCCGCTACGTGCCGGAGGGGAAGAGACGGGCCTCGGGGGCGGCACGTGGCGCGCCGCTGAGGCTGAGCGACGACGATTCGCAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGCTGATGCGCCGCCGTTTGAGGAGAATTGGCCGGGATATGACTCGCCGGAGGCCGCTGACTCGTCGAGGAAGAGGAGGAGCTTGGATGCTACTAATGCCACCACTGAGTATTCTGATGGGAGCTCGGATACTTCTGAGGATACTGGAGGGCAGATTTGCCATCAGTGCCGCAGGAATGACAGAGGCAGGGTGGTTACTTGGTGCCAGCGGTGTGATCGGAGAGGATACTGTGATAGCTGTATATCAACATGGTACTCAGACATTTCGTTGGATGAAATTCAGAGGATGTGTCCTGCGTGCCGTGGTGTATGTAACTGTAAAGTTTGCTTACGTAGTGATAATTCAATAAAGGTTCGGATACGGGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACTCGCTGCTATCATCGGTGCTTCCTGTAGTCAAAGAGATCCATTCTGAACAGTGTTTTGAGGTTGAGCTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTACCAGAATAAAATTGGGTGCAGATGAGCAGATGTGCTGCAATTTATGTAGGATACCCATTACTGATTATCATCGACGCTGTCCAAGATGCTCATATGATTTGTGCCTTAATTGCTGTCAAGATCTTCGAGAAGCAACTGCAACTCCCAATAAAGAACCCCAAACGGAGCTGGCAAGAGCTTATGAACAAAACATATTAAGTAAGGTTCCTCATTGGAGATCCAATGAGAATGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGCGGTTGTTCATCTTTAAATTTAAGCCGGATTTTCAAGATGAATTGGGTTGCAAAGTTGGTGAAAAATGTTGAGGAAATGGTTAGTGGCTGTAGGATTAATACTGCTGATGGTCCAGCAGAAAATGAGTCGAATCCTCTCAGACTTTGCCAATGTTCTCATAGAGAGGGTAGTGATGACAATTATCTTTTTTGTCCTACATCTGAAGATCTCAAAACTGATGGGATTGGCAATTTTATAAAGCACTGGAAAACTGGTGAACCCATTATTGTTAAGAAAGTATTTGATAGGTCATCCGTTTCAAGCTGGGATCCAATGATCATCTGGAGAGGGATTCTAGAGACAACAGATGAGAAAATGAAAGATGAAAACAGAATTGTTAAAGCCATAGACTGCTTAGATGGGTCTGAGATTGATATTGAGCTTAGTCACTTCATGAGTGGATACTCTGAGGGGCGTATTCATGATGATGGTTGGCCACAATTATTGAAGTTGAAAGATTGGCCCTCGCCTAGTGCATCTGAAGAATTTCTCTTGTACCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTGCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCCCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGGATCAATGATGAGCTTGGCAGGGGTGACTCAGTGACCAATCTCCACTTCAATATGTGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTAAAGCTGAAGGACTGGCCGAGAAATAAAATTGAAATGATACAAAAAACATACAAGGAATCTGTGGTGAAGGAACCACGTGGGGATCAACAAACGTCTTCAAGGGGTAGTTCACCTGATTCATCATATGGTACAGAAAGTAATGGGTTGAATCTGGATTCAAACCAGAGTAAGTTGGTTATGGATCAAGGGTTTGAAAATCATTCTAGTTCTGAAGGGAATACTGTCGATAATGAACTTCCATTCCAACAAAATGGAGATATATCGGAGACAACACATCCTGGAGTCCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGTTGAATGATTATTTGAAAATGCATCAGGAGGAATTTAGAAAGCCAGATGATATCTTAAATGAATTTGTTACATGGCCTCTTTATGATGGTGCTATTTTTCTTGGCAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGAATTTGGGCGAAGCAATCTTTGTTCCTGCTGGTTGCCCTTTCCAGGCAAGAAATGTTCAGTCCACTGTTCAGTTGGGGCTTGATTTCTTATCTCCGGAAAGCCTAGGGGAGGCCGTAAGATTGGCAGAGGAAGTCCGCTGTCTACATAATGAACATGAAGCAAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAGGAAGTGCAGAAACTTGTACTTGACCCTAAACTTGGTGCAGAAATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGAAGGCAGATTACCTGTGCTTGA 2829 0.4595 MDQARSSSGNNIGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSHAAADSDTKSDDFDLPLSSAIKLADPSSGGSRFLDKVSKNQFRYVPEGKRRASGAARGAPLRLSDDDSQEEEEEEEEEADAPPFEENWPGYDSPEAADSSRKRRSLDATNATTEYSDGSSDTSEDTGGQICHQCRRNDRGRVVTWCQRCDRRGYCDSCISTWYSDISLDEIQRMCPACRGVCNCKVCLRSDNSIKVRIREIPVLDKLQYLHSLLSSVLPVVKEIHSEQCFEVELEKKLRGAEIDLTRIKLGADEQMCCNLCRIPITDYHRRCPRCSYDLCLNCCQDLREATATPNKEPQTELARAYEQNILSKVPHWRSNENGSIPCPPKEYGGCGCSSLNLSRIFKMNWVAKLVKNVEEMVSGCRINTADGPAENESNPLRLCQCSHREGSDDNYLFCPTSEDLKTDGIGNFIKHWKTGEPIIVKKVFDRSSVSSWDPMIIWRGILETTDEKMKDENRIVKAIDCLDGSEIDIELSHFMSGYSEGRIHDDGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHCKWGLLNVAAKLPHYSLQNDVGPKIYISYGINDELGRGDSVTNLHFNMCDMVYLLVHTSEVKLKDWPRNKIEMIQKTYKESVVKEPRGDQQTSSRGSSPDSSYGTESNGLNLDSNQSKLVMDQGFENHSSSEGNTVDNELPFQQNGDISETTHPGVLWDVFRRQDVPKLNDYLKMHQEEFRKPDDILNEFVTWPLYDGAIFLGRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRCLHNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1770 942 ProSiteProfiles WRC domain profile. 19 63 IPR014977 -
Dod06g1770 942 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 931 IPR045109 GO:0032454|GO:0033169
Dod06g1770 942 MobiDBLite consensus disorder prediction 58 201 - -
Dod06g1770 942 MobiDBLite consensus disorder prediction 728 747 - -
Dod06g1770 942 ProSiteProfiles JmjC domain profile. 578 872 IPR003347 -
Dod06g1770 942 PANTHER JMJC DOMAIN PROTEIN JMJ24 12 931 - -
Dod06g1770 942 MobiDBLite consensus disorder prediction 182 201 - -
Dod06g1770 942 SUPERFAMILY Clavaminate synthase-like 488 879 - -
Dod06g1770 942 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 199 265 IPR018866 -
Dod06g1770 942 Pfam JmjC domain, hydroxylase 759 851 IPR003347 -
Dod06g1770 942 Gene3D Cupin 467 881 - -
Dod06g1770 942 MobiDBLite consensus disorder prediction 1 23 - -
Dod06g1770 942 SMART cupin_9 585 872 IPR003347 -
Dod06g1770 942 ProSiteProfiles Zinc finger RING-type profile. 204 252 IPR001841 -
Dod06g1770 942 MobiDBLite consensus disorder prediction 685 716 - -
Dod06g1770 942 MobiDBLite consensus disorder prediction 71 85 - -
Dod06g1770 942 MobiDBLite consensus disorder prediction 139 156 - -
Dod06g1770 942 Pfam WRC 20 60 IPR014977 -
Dod06g1770 942 MobiDBLite consensus disorder prediction 690 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1770 Dod-Chr6 24436709 24445427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1770 20 60 GRF Transcription Factor Family AT3G13960 46.341 3.35e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod06g1770 JmjC 2.9e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1770 K15601 - gmx:100792166 1470.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1770 06 24436709 24445427 Dod06g1770 06 24436709 24445427 ECH