Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1768 ATGTCAAACATCACTAGTTGTGATAGTGGGAGCTTCTCCACAGAGAACACCACAGAAGATGCAGTTAAACAGCAATCAGAGATACTGGGTCAGTTCCATAGTCCACATTCCCATACTTCAACAACAACAACAACAAACAACAGCAATGGTTCCAACACAAATTCACAGCCACCTCCACCTGTCAAGAAGAAGAGGAGCCTACCAGGAAATCCTGATCCAAGTGCTGAAGTCATAGCTCTATCTCCAAACACACTCATGGCCACAAACAGGTTCATATGTGAAATATGCAACAAAGGGTTCCAAAGAGACCAAAACCTTCAACTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTCAAGCAAAGAACAAGCACAGAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAGTACGCCGTTCAGTCTGACTGGAAAGCCCATTCAAAGATCTGCGGTACAAGGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATTACCCACAGAGCTTTCTGTGACGCACTGACAGAGGAGAACAACAAAGCCAACGAAGGACCTTTGTCAAAGATAAGTTCAAACCTGCAATGCCAACCAAATATCCCAAACCTCGTAGTTCCCTCACTACCACCGATCAACACCAACACCAACCCACAACTTGGTGGAACCAGTAGCCATTCCGATCACAACAAGCACAATAACGTCCCTTTATCACTCCCTCACGACCTCATTCCAAAACCCTTCAACAACAACAACAACAACATGAACATGAACATGGCTACTGCTTCGTTCCCAAGAACCCTTTCATCACCACCATCAAACTCCTCTCACCCCTCTCTTCAGCTCAGCTCAAACACGCTCAACATCTTCGAGGAAAACGGGCTCCATTTAGCTTCAGGGTCATCACCACACATGTCAGCCACGGCATTGCTTCAAAAAGCTGCACAAATGGGTGCAACCGTGAGTAACACTATCAGCGTGGAAAAGGGTTATGCCACAACAAGCATGGCACCCCCATCATTTGGTGCAATAGTGCAACAACAACAACAACAACAAAATGTTCATAGTTCATTTATGAACCAATTCATGCACAACAACAATGGCCAGCAAGATATGTCTTCCCAATTTGGTTTCAATGGGTCGTTGGGTAGTACTGTTGGCGTTGGAATGAACGGGGTGGACATGTTTAATGCAATCTTGGACCAAAGCAAGGCACTGTCGAAGATGATAGAGCAGAACAACCTTGGGAATAATACCGCTAGTGGAGGTGCAGCAGCAAATAATAATAATGGTGGATCATCAAGTAACAATGTTAGTGGTGCAATCAACATTGGTGGAAGTAAGGGAAGTGGTGGGGATGTGATGACATTGGACTTGTTGGGGATAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTGCACATGGGGGTTTCTATGGTGGTGGTCATCATCAACAACAACAAGGAGAAAATGCTGCAAGAGATGATCAGGTTTGGAGAAATTGGTCAGCCAAGAATGCTGGCTTTGAATCTTTTTCAGCAACAAGCAGCATTTGA 1596 0.458 MSNITSCDSGSFSTENTTEDAVKQQSEILGQFHSPHSHTSTTTTTNNSNGSNTNSQPPPPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKANEGPLSKISSNLQCQPNIPNLVVPSLPPINTNTNPQLGGTSSHSDHNKHNNVPLSLPHDLIPKPFNNNNNNMNMNMATASFPRTLSSPPSNSSHPSLQLSSNTLNIFEENGLHLASGSSPHMSATALLQKAAQMGATVSNTISVEKGYATTSMAPPSFGAIVQQQQQQQNVHSSFMNQFMHNNNGQQDMSSQFGFNGSLGSTVGVGMNGVDMFNAILDQSKALSKMIEQNNLGNNTASGGAAANNNNGGSSSNNVSGAINIGGSKGSGGDVMTLDLLGIGGGGGGGGGGGGAHGGFYGGGHHQQQQGENAARDDQVWRNWSAKNAGFESFSATSSI* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1768 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 126 - -
Dod06g1768 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 126 476 - -
Dod06g1768 531 MobiDBLite consensus disorder prediction 225 246 - -
Dod06g1768 531 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 126 - -
Dod06g1768 531 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 126 476 - -
Dod06g1768 531 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Dod06g1768 531 MobiDBLite consensus disorder prediction 1 75 - -
Dod06g1768 531 MobiDBLite consensus disorder prediction 1 60 - -
Dod06g1768 531 MobiDBLite consensus disorder prediction 488 511 - -
Dod06g1768 531 Gene3D Classic Zinc Finger 88 159 - -
Dod06g1768 531 SUPERFAMILY beta-beta-alpha zinc fingers 90 157 IPR036236 -
Dod06g1768 531 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Dod06g1768 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Dod06g1768 531 SMART c2h2final6 91 113 IPR013087 -
Dod06g1768 531 SMART c2h2final6 137 157 IPR013087 -
Dod06g1768 531 MobiDBLite consensus disorder prediction 225 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1768 Dod-Chr6 24428350 24432426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1768 52 357 IDZ Gene Family AT3G50700 47.578 1.52e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g1768 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1768 - - gmx:100785295 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1768 06 24428350 24432426 Dod06g1768 06 24428350 24432426 ECH
Dod01g2453 01 63482964 63487609 Dod06g1768 06 24428350 24432426 PCT
Dod01g3366 01 74918643 74923386 Dod06g1768 06 24428350 24432426 PCT