Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1766 ATGGACAATGAGCAGGATAGGACTTTGCCCATTGCAAATGTGGGACGAATCATGAAGCAAATCCTGCCTCCAAGTGCAAAGATCTCCAAAGAAGGGAAGCAACTAATGCAAGAGTGTGTGACAGAGTTCATTAGCTTTGTGACCGGTGAGGCATCTGACAAGTGTCACAAGGAGAACCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCACTAAGCTCCTTAGGGTTTGACAACTATGCTGAGGCCATGACAAGGTACTTGTACAAATACAGGCAAGCTGAAAGGGAAAAAGTCAACAATCACAGTCACAACAAATTTGATGATGGTGCTACTGCTGCCAAATACAAGTATGAAGGATCAGCAAGGGAGGAGCAAACTGAACATCAGTGTAGGGTTACTACTCAGAGGACTGAAAACCACCCTCCTGCAAATCAATCTGGATGA 447 0.4541 MDNEQDRTLPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAMTRYLYKYRQAEREKVNNHSHNKFDDGATAAKYKYEGSAREEQTEHQCRVTTQRTENHPPANQSG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1766 148 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod06g1766 148 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 134 - -
Dod06g1766 148 SUPERFAMILY Histone-fold 5 112 IPR009072 GO:0046982
Dod06g1766 148 MobiDBLite consensus disorder prediction 98 135 - -
Dod06g1766 148 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 72 IPR003958 -
Dod06g1766 148 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Dod06g1766 148 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Dod06g1766 148 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Dod06g1766 148 Gene3D Histone, subunit A 1 144 IPR009072 GO:0046982
Dod06g1766 148 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 134 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod06g1766 148 MobiDBLite consensus disorder prediction 98 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1766 Dod-Chr6 24320613 24321726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1766 1 102 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.549 1.85e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod06g1766 CBFD_NFYB_HMF 2.2e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1766 K08065 - gmx:100791116 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1766 06 24320613 24321726 Dod06g1766 06 24320613 24321726 ECH