Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1741 ATGGATCCCCCAGACCACAGCCAGAACAGGAACACTCCTTTGGGATTTGGTGGTAGTGAAGAATTGACATATGGTTCTGGCCACCAATTTCCACCTGGGATGGTCGTTGCACCAGATGGGACCATTCAACCTCCCACAGCTCAACCGGTTGGAGCTCGGCAACCACAAGAACAACACACTCATCAATTTCTTCAAAGCCTACATGCTGAGCAACTTCATCGTCGACGGGAGCAAGAAAGGGAATCACTTAGCCAACTGCTCCAAGCTTATTGGGAAAACCAACGCCAAGAAATTGAAAGGGTGAATAACTTCAAGAGCCCCAGCGTTCCCTGGGCAAGGATCAAGAAGATCATGAAGGCCGACGAGGATGTCCGGATGGTATCGGCGGAGGCGCCGGTCCTGTTTGCGAAGGCCTGCGAGATGTTCATATCGGAGCTGACCTTGTGCGCCTGGAATCACACAGTAGGGGATAAGAGGACAACGATCCAGAAGACTGACGTTGCAGCAGCACTGGCAGGAAAAGAAACCTTTGATTTCTTGCATCACATTGTGCCTAAGGAGGTGCAGCAATTGAAAGATGAAGCGGCTGCATCTGGTGTCATGATAGGTAATCTTGCAAAGGATCCAGGAGGAACATCAATGCCTGTTCCACGGCCTTCCGGTTCTGTTCCTTACGGCTATATGCCACCTCAACATGCACCCCAAGTTGGAATTGCTGGTGTCATAATGGGTGATCCTGCAATGGACCCAAATTTACATGCTCAGCAGCAGCCTCTTCCCTACAACATGGAAACACATGATGGAACTGCTGGTGTCATGATGGGTGATCCTGCAGTGGACCCAAATTTGTATGCTCAGCAGCCTTATCACTATATTGCACCACAAGGTGGAACTGCTGGTGTTATCACGGGTGATCCTGCAATGGACCCTAATTTATATGCTCAGCAGCCTGATCTCTACGTGGCACATTCACAAATGTTGCAACAGCAGCCACCAGAGCAACAAGAAATACAACAAATGTGGCCACAGCAGCAACTAGAGCAACAACAAGCACCACAAATGTGGCCACAGCAGCCACCAGAGCAACAACCACCACCCCCAGATAATTAG 1110 0.4991 MDPPDHSQNRNTPLGFGGSEELTYGSGHQFPPGMVVAPDGTIQPPTAQPVGARQPQEQHTHQFLQSLHAEQLHRRREQERESLSQLLQAYWENQRQEIERVNNFKSPSVPWARIKKIMKADEDVRMVSAEAPVLFAKACEMFISELTLCAWNHTVGDKRTTIQKTDVAAALAGKETFDFLHHIVPKEVQQLKDEAAASGVMIGNLAKDPGGTSMPVPRPSGSVPYGYMPPQHAPQVGIAGVIMGDPAMDPNLHAQQQPLPYNMETHDGTAGVMMGDPAVDPNLYAQQPYHYIAPQGGTAGVITGDPAMDPNLYAQQPDLYVAHSQMLQQQPPEQQEIQQMWPQQQLEQQQAPQMWPQQPPEQQPPPPDN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1741 369 Coils Coil 69 89 - -
Dod06g1741 369 MobiDBLite consensus disorder prediction 327 369 - -
Dod06g1741 369 MobiDBLite consensus disorder prediction 1 16 - -
Dod06g1741 369 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 108 171 IPR003958 -
Dod06g1741 369 MobiDBLite consensus disorder prediction 327 356 - -
Dod06g1741 369 SUPERFAMILY Histone-fold 85 180 IPR009072 GO:0046982
Dod06g1741 369 MobiDBLite consensus disorder prediction 47 61 - -
Dod06g1741 369 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 293 336 - -
Dod06g1741 369 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 21 262 - -
Dod06g1741 369 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 260 295 - -
Dod06g1741 369 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 293 336 - -
Dod06g1741 369 Gene3D Histone, subunit A 54 186 IPR009072 GO:0046982
Dod06g1741 369 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 21 262 - -
Dod06g1741 369 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 260 295 - -
Dod06g1741 369 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1741 Dod-Chr6 23956349 23958512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1741 89 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 51.852 2.30e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dod06g1741 CBFD_NFYB_HMF 4.8e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1741 K08066 - gmx:100782754 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3395 01 75128532 75131398 Dod06g1741 06 23956349 23958512 PCT