Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1680 ATGTTTAATGGAGTACCAGACCAGTTCCACCAATTCATAACACCAAGGACCTCATCACTCCCTCTTCACTTACCCTTCCCTCTTCATGCTAACAATACTACCCCAAACAACACTTTCCCTGCTCCTTTTGATCCTTACAATCATCATCACAACCCTTCTCACCATCATCATCATCATCACCACCATCAATTTCCATCACTCCACCAAGTCCAACCCAATCTCTTGCACCCTGCTGCCCCATTACACCCCCACCAGTCTCCTTCTTCTTCTTCCACAGTACACAAGCATGAAGAGAAGGAAGAGAACAGCACCACAGTGCCAATGAACTTCGAAATTGAGAGAGATCAAAGGCAACAACTGCCCGAGCTGATTGATCCCTGGACTAACGACGAGGTGCTCTCGCTTCTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTGGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAAGAGAAGTTTGAGGAAGAGAGCAGATACTTCAACAACATTAATAACTACGGAAAGAGTAGTTACCGGTTTCTTAGTGAGCTTGAGGAGCTTTATCAAGGTGGGGGTGATCAAAACCCTCATAATCATCACAATCAAGAGGTTGAGAGTGAGAAGAATCATCATCAGCAAGTGGTGGAGAACCCAAGTGAGGGACAAGAAGAAGACAAGATGATGGGGAATGCATTGGAAGATCAAGATGGTTCAGTGACAAAACAAAAGGAGCATCATGAAGAGGTTGTGGCTATGGAGGAGAGAACTAATAATAAGGAGAGGAAGAGGAAGAGGGGTGGTAGTGGTGGTGGAAGGTTTGAGATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGAGCAGCAAGAGCAGATGCACAACAAGCTTATTGAGGATATGGTGAGAAGGGACGAGGAGAAGTTTGCTAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAAAGGATGAACAAGGAGCTTGAGATTATGGCCCAGGAACAAGCCATTGTTGGTGATAGACAAGCCAACATCATTGAGTTCTTGAAGAAATTCTCCCCAGAAATTCAAAGCCTTGGAATTGGCAATAATGACAACAATGGAAGAGACAAATTAGTCAAGCCAACACCTTCTTCTGCTGTGATTCTCAATCCATCTTTAGTGGCAGCAGAAAACCCTAGCTCGAGTAGTAATCATCCTGCACAAGACGCATTACAAGTTGTTGCTTCTTCTACTACTGCTTCAGCTCCTCCTCCAGCTCCAGCTGGCAAGAACCCTAGTTCTTCACTCAACAATGATCCAATAGAGACAAATTCAGTTCCAAATAAGGCCACCTCAAACCGTGTGTCCACCAGCACTAGTACTACTGAGAAAGACGACATCGGGAGAAGGTGGCCAAAAGATGAAGTGTTGGCACTGATAAACCTCAGGTGCACAAGCCAAAACAACAACAACAACAACAATAGTGAGGACAACAATAATAACAATAAGGAAGGGAATAACAAGGCTCCACTGTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGGTACAACAGAACTGCCAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACAAAGGATGTAAACAAGAAAAGGTCACTTGATTCAAGGACTTGTCCCTATTTTCACCAACTGAGTAATCTGTATAGTCAAGGATTTCTTGTTCTACAACCTGAGAAGCAAGAAAACCAGCTGAATCCACCAGCAAATAATCATGGAAATGTGGTGACAGATCAGAATGAAACACAATTAGCTGAGACTTCTCAAGTGGTGGGGTCTGGTGGCTTCAGTGTGCAGGTTGATCATGGAGGTGAGAAAACTTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1944 0.4424 MFNGVPDQFHQFITPRTSSLPLHLPFPLHANNTTPNNTFPAPFDPYNHHHNPSHHHHHHHHHQFPSLHQVQPNLLHPAAPLHPHQSPSSSSTVHKHEEKEENSTTVPMNFEIERDQRQQLPELIDPWTNDEVLSLLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINNYGKSSYRFLSELEELYQGGGDQNPHNHHNQEVESEKNHHQQVVENPSEGQEEDKMMGNALEDQDGSVTKQKEHHEEVVAMEERTNNKERKRKRGGSGGGRFEMFKGFCESIVHKMMEQQEQMHNKLIEDMVRRDEEKFAREEAWKKQEMERMNKELEIMAQEQAIVGDRQANIIEFLKKFSPEIQSLGIGNNDNNGRDKLVKPTPSSAVILNPSLVAAENPSSSSNHPAQDALQVVASSTTASAPPPAPAGKNPSSSLNNDPIETNSVPNKATSNRVSTSTSTTEKDDIGRRWPKDEVLALINLRCTSQNNNNNNNSEDNNNNNKEGNNKAPLWERISQGMLELGYNRTAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSNLYSQGFLVLQPEKQENQLNPPANNHGNVVTDQNETQLAETSQVVGSGGFSVQVDHGGEKTLMQVPSLDFDQF* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1680 647 MobiDBLite consensus disorder prediction 212 284 - -
Dod06g1680 647 MobiDBLite consensus disorder prediction 50 65 - -
Dod06g1680 647 MobiDBLite consensus disorder prediction 202 285 - -
Dod06g1680 647 ProSiteProfiles Myb-like domain profile. 478 547 IPR001005 -
Dod06g1680 647 MobiDBLite consensus disorder prediction 33 106 - -
Dod06g1680 647 MobiDBLite consensus disorder prediction 422 478 - -
Dod06g1680 647 Pfam Myb/SANT-like DNA-binding domain 125 200 IPR044822 -
Dod06g1680 647 Pfam Myb/SANT-like DNA-binding domain 477 575 IPR044822 -
Dod06g1680 647 MobiDBLite consensus disorder prediction 492 515 - -
Dod06g1680 647 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Dod06g1680 647 PANTHER - 14 639 - -
Dod06g1680 647 Gene3D - 127 183 - -
Dod06g1680 647 Gene3D - 479 552 - -
Dod06g1680 647 MobiDBLite consensus disorder prediction 371 391 - -
Dod06g1680 647 MobiDBLite consensus disorder prediction 439 470 - -
Dod06g1680 647 CDD GT1 477 554 - -
Dod06g1680 647 SMART sant 475 549 IPR001005 -
Dod06g1680 647 SMART sant 123 180 IPR001005 -
Dod06g1680 647 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 14 639 - -
Dod06g1680 647 MobiDBLite consensus disorder prediction 492 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1680 Dod-Chr6 22881242 22883940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1680 126 579 Trihelix Transcription Factor Family AT5G28300 42.600 7.43e-102 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dod06g1680 Myb_DNA-bind_4 2.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1680 - - gmx:100804367 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3478 01 75951427 75954254 Dod06g1680 06 22881242 22883940 PCT