Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1669 ATGGCGGGTAATGGCTCGGAGGGTTTGGGTGATGATTTCTTCGAGCAGATCTTAGCAGTGCCTGAGGCTGCAGCATATGGCAGTAGTAGCAGGATAGTGATGGGTGGTGGTGGCGGCGGCGATGTGGGGTCCACTCCAATGGTGCTTCAACTGGGGTCCACAACAACAAGTGTTGGCGATGGTGTTGGTGTGTTGAGAGGAGGAGGGTCTTTGGGGATGGGAATGGGCATGCCTTTGGGTTTGAATTTGGAGCAAGCTGGTTTTCTCAGGCACCAAGATGGTAGACGGTTCACTGAAGACGTTGTTGATGTTGATGGTAGCATTACCAATAACCATCATCATCATCATAACCTCCGTCTCAATAATAACCATCATAACAACAACAATAATAATAACAATAGCAACAACAATAATAGCAGCTCTTCGTCTTCCTCTTCTACTGCAGGAATCACCGATAGGGATTCGATGCACATGAGGGGCTTGTTTCCAGCCTTTGGCCAATTGCATACTCCTACTCATGCTCACCATATCCGCCCCACACTCCCATCTCCTCCTCCTCCTCAACCCCAACTCCACCTCCACCATCACCACTACCACCACCAGCCCTTTCAGAGCCACGTACCAGCGCCAGTGTCTGCTGCTACTATGCCACAGCCACCTGGCATACGCCCTCGAGTGCGTGCAAGAAGAGGCCAAGCCACTGACCCCCACAGTATCGCTGAGCGTTTACGTCGTGAAAGAATCGCGGAAAGAATGAAGGCATTGCAAGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCGATGCTTGATGAAATTGTGGACTATGTGAAGTTTCTAAGGCTCCAGGTTAAGGTCCTAAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTTGCTCAGCTTGTGGCTGATGTTCCCCTATCTGCAGTGGAGGGTGAGGACACAGAAGGTGGAACCACCAATCAGCAGGCCTGGGAGAAGTGGTCCAATGATGGCACAGAGCAACAAGTTGCTAAACTCATGGAAGAAGATGTTGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTATGCATCATGCCCATATCTCTAGCCTCAGCCATCTTTCGCATGCCACAGTCAGAAGCATCAACACTCATCAAGCCTGAATCAAACGGCCACTCATAG 1170 0.5034 MAGNGSEGLGDDFFEQILAVPEAAAYGSSSRIVMGGGGGGDVGSTPMVLQLGSTTTSVGDGVGVLRGGGSLGMGMGMPLGLNLEQAGFLRHQDGRRFTEDVVDVDGSITNNHHHHHNLRLNNNHHNNNNNNNNSNNNNSSSSSSSSTAGITDRDSMHMRGLFPAFGQLHTPTHAHHIRPTLPSPPPPQPQLHLHHHHYHHQPFQSHVPAPVSAATMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGEDTEGGTTNQQAWEKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTLIKPESNGHS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1669 389 Pfam Helix-loop-helix DNA-binding domain 237 281 IPR011598 GO:0046983
Dod06g1669 389 Gene3D - 227 289 IPR036638 GO:0046983
Dod06g1669 389 SMART finulus 238 287 IPR011598 GO:0046983
Dod06g1669 389 MobiDBLite consensus disorder prediction 108 152 - -
Dod06g1669 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Dod06g1669 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 376 - -
Dod06g1669 389 MobiDBLite consensus disorder prediction 122 152 - -
Dod06g1669 389 MobiDBLite consensus disorder prediction 174 193 - -
Dod06g1669 389 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 376 - -
Dod06g1669 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 291 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1669 Dod-Chr6 22726272 22734055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1669 198 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 74.737 1.09e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g1669 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1669 - - lang:109355094 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1669 06 22726272 22734055 Dod06g1669 06 22726272 22734055 ECH