Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1657 ATGCTTCATAAGTCGACCTTTCCCACGTTAGAAACTGTCGAACATAGTTGGAGTCAAATGCCAATACAACACAACTCGCACGCGCACAAAAGGGTTGGTTGGTTTCTTGGTACTCGCTATACCCCGTCCAGTGTTGTGAAAGTAAAGAGAGATACGCTGCGAGCATGCATGACGTGCCCTCTTTGCAATAAGCTCTTGAAGGACGCCACCACCATCTCTCTCTGCCTTCATACCTTTTGCAGGAAGTGCATATATGAGAAACTCTCGGATGAGGAGGTGGATTGTTGTCCTGTGTGCAATATTGATTTAGGCTGCATTCCTGCGGAAAAACTCAGGCCAGACCATAATTTACAAGATATAAGGGCAAAAATATTCCCTTTTAAAGGACAAAAGATCAAGGCCCCAGAAGTTTTACCTTCAGTATCCCTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCAAAAGTTCCCATGCAAACTGGCTTTACGGGAAAGAGAACAAAAACTGCTACAAGAAAGGCCGCTGCTTTGCGTGGATGCAGTTTTATTCTTGAAGAATCCATAAAGAAGGAAGAAACAAATGGGGAAGATAAAATGGATTCTTCCATGGCTGAGCCTTCGAAAAATCATAAGCCCAAGCAAGACACACAGAATGGTGTGGAACTTACAGAAGGGAAGGTTGATCTCTGGACACCATTGAACTGTCTTGTTGAAGCAGCCAACAGAACAAAGTCCTCAAGGTCAAATTCACAAGCAATTCCCCCTTTCAAATCAGAGTCACCAACTACTCCACATGATGGACGTGAGATGCCTGAAATTACCAAAAATGCTGAGCTACCTGCTTCTGTTCAGAGTGAAATAAGCTTTCCTAAATCCAAAAATAAGGATAATGGACATAAAACGAAATTTGGAGATGACAAGGATGGAAACAGCTTGCCTTCAGGATCAGTGAAGCGAAGAAGGTTGCGTGCTGCTGGACAGAAAAGAGTTGCAGCATCTGAGGTGTCTGCCTCAGCCCAAGTCATGCTAGATGCAAAAGGGGGAAATTGCAACAGAAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGACATCCCCTTGCCACAGATCTCAGCATGTTACTTGAGAATAAAGGATGGTACTGTGCCTGTCTCACTTATTCAGAAGTACCTCGTGAAGAAGCTTAATCTTGACGGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTTCCATCTCTACAACTGTATAACCTTGTAGATTTGTGGTTCCGAACAGCATCTGCCTCAAAGAAGATACCAGCATCTGTGGGGTCCTCAGCCAAGGATTTTGTTATGGTTTTATCTTGTTTTGCCTCTGTTGGCCTCTAG 1413 0.4409 MLHKSTFPTLETVEHSWSQMPIQHNSHAHKRVGWFLGTRYTPSSVVKVKRDTLRACMTCPLCNKLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCIPAEKLRPDHNLQDIRAKIFPFKGQKIKAPEVLPSVSLPAKRKERSLSSLVVSAPKVPMQTGFTGKRTKTATRKAAALRGCSFILEESIKKEETNGEDKMDSSMAEPSKNHKPKQDTQNGVELTEGKVDLWTPLNCLVEAANRTKSSRSNSQAIPPFKSESPTTPHDGREMPEITKNAELPASVQSEISFPKSKNKDNGHKTKFGDDKDGNSLPSGSVKRRRLRAAGQKRVAASEVSASAQVMLDAKGGNCNRKNSPIWFSLVASEDQKGDIPLPQISACYLRIKDGTVPVSLIQKYLVKKLNLDGEAEVEIMCRGQPVLPSLQLYNLVDLWFRTASASKKIPASVGSSAKDFVMVLSCFASVGL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1657 470 MobiDBLite consensus disorder prediction 194 223 - -
Dod06g1657 470 MobiDBLite consensus disorder prediction 247 264 - -
Dod06g1657 470 Gene3D - 343 446 - -
Dod06g1657 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 151 IPR013083 -
Dod06g1657 470 SMART ring_2 59 99 IPR001841 -
Dod06g1657 470 MobiDBLite consensus disorder prediction 247 335 - -
Dod06g1657 470 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 44 466 - -
Dod06g1657 470 ProSiteProfiles Zinc finger RING-type profile. 59 100 IPR001841 -
Dod06g1657 470 SUPERFAMILY RING/U-box 53 124 - -
Dod06g1657 470 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Dod06g1657 470 ProSitePatterns Zinc finger RING-type signature. 75 84 IPR017907 -
Dod06g1657 470 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 44 466 IPR044807 GO:0004842
Dod06g1657 470 MobiDBLite consensus disorder prediction 194 226 - -
Dod06g1657 470 MobiDBLite consensus disorder prediction 298 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1657 Dod-Chr6 22560372 22567318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1657 45 390 C3H Transcription Factor Family AT2G30580 44.505 1.47e-86 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1657 K16277 - gmx:100783999 673.315