Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1654 ATGTCTGCCGCAGCAGCAACTCAATCCAAGGCTAAGAAAACGGCGTCGTCCAAGAAGTCACCCTCTCACCCTCCCTTCGCTGAGATGATTACCGATGCGATTGTGAGTTTGAAAGAGAGAACAGGTTCGAGTCAGTACGCGATAACGAAGTTCATCGAGGAGAAGCACAAGGCTCTTCCACCAACCTTCCGGAAGCTTGTTCTTCACAACCTGAAGAAATCCGTTGCTGCTGGTAAGCTTGTGAAGGTGAAGAACTCGTTCAAGCTTGCACCTAAAGCTGCTGCTCCTGCTAAGGCTTCTTCTGCGCCTAAGACGAAAGCTGCTTCCAAGCCTAAGGCAAAAGCAGCGTCCAAACCTAAGGCTAAAGCTGCTGCTGCTACTTCGACTGCTGCTCCGAAGCAGAAGGCTGCTGCCAAACCTAAGGCCAAGGCGGCTGGTTCGGTTGCTGCGAAGGGGAAGGCGAAGGCGAAGGCGGTGGTGACGAAGAAGGTTGTGGCGAAGTCAGTGAAGAAGACGCCAGTGAAGAAGCCGAAAAGCGTGAAGTCGCCGGCGAAGAAAGCACCAGCGAAGAAGGCGAAGAAGTGA 585 0.5316 MSAAAATQSKAKKTASSKKSPSHPPFAEMITDAIVSLKERTGSSQYAITKFIEEKHKALPPTFRKLVLHNLKKSVAAGKLVKVKNSFKLAPKAAAPAKASSAPKTKAASKPKAKAASKPKAKAAAATSTAAPKQKAAAKPKAKAAGSVAAKGKAKAKAVVTKKVVAKSVKKTPVKKPKSVKSPAKKAPAKKAKK* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1654 194 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 22 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod06g1654 194 MobiDBLite consensus disorder prediction 168 194 - -
Dod06g1654 194 PRINTS Histone H5 signature 36 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod06g1654 194 PRINTS Histone H5 signature 9 30 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod06g1654 194 PRINTS Histone H5 signature 145 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod06g1654 194 PRINTS Histone H5 signature 167 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod06g1654 194 PRINTS Histone H5 signature 106 120 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod06g1654 194 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 4 191 - -
Dod06g1654 194 PANTHER HISTONE H1 4 191 - -
Dod06g1654 194 MobiDBLite consensus disorder prediction 91 194 - -
Dod06g1654 194 SMART h15plus2 20 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod06g1654 194 MobiDBLite consensus disorder prediction 1 26 - -
Dod06g1654 194 MobiDBLite consensus disorder prediction 1 21 - -
Dod06g1654 194 Gene3D - 17 104 IPR036388 -
Dod06g1654 194 SUPERFAMILY "Winged helix" DNA-binding domain 19 103 IPR036390 -
Dod06g1654 194 CDD H15 23 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod06g1654 194 Pfam linker histone H1 and H5 family 23 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1654 Dod-Chr6 22536957 22538054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1654 22 89 Single Myb Histone (SMH) Gene Family AT1G49950 36.000 1.95e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1654 K11275 - cpap:110811938 119.398