Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1640 ATGACGCTTGACCTGGAAACTGTCAGCCACTTGGCTTGTTCAACTGGATTCCTTGTGATCTGTAAAACAGCTGCATCTGAGATGGAGGGAAAACCTGAGGATGAGGTAGTAGATATTGAGAGTGCTTCTAGTGGTTCTTTCAACGATGACTCAGATGATGAGGGATCTTTACCTTCTGAAATAGATGACGGAGTGCATCTTGAGGAACCTTTGACTGAGGAGGAAATAGAAGACCTTATTTCCGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCCCTTGAAGAGGAATCTCTTGCCAAAGTGGAGAGTGAAGTGAGACAAGAATTGCAGCAAATTCTTAAGGGGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTGCTTTTAAAGAAGAGTGGGAAACTGCTCTGGATGGCCTTGAAACTGAAAGTGCCAACTTACTGGAACAACTTGATGATGCTGGAATTGAGCTCCCAAGCCTTTATAAGTGGATTGAAAGAGAAGCTCCTAATGGTTGCCGCACTGAAGCATGGAAACAGAGGAATCATTGGGTAGGGTCTCAGGCAAGTGCTGAAATTGCTGTGTCAATTGCTGATGCTGAGAAGTATCTACAAGTAAACAGACCTGTCAGACGGAAACATGGTAAGTTACTTGAAGAGGGAGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAGCCTGTAAAGAAGGAAATGGTGGGAGATTGGGATTTGTTCAATAAAATAGTTTCTGATGGGAGTAGTGCTGATGTTTCATTTGCCAGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCATTGATGGGACTCAAATTTCCTGGAGTTAATGAGGTGGAGGAAATTGATGATATTGATGGCAGTTCTACTGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAGCTAGATCTTTCTGAAGAGCAAAGGAGACAATTTAAGAAGGTCAAAGAAGAGGATGATGCTATTGATGATAGAAAGCTTCAAATCCGCTTGAAACATAGGAGGCATCGAAAGAAAAGTAAACAGGAAGGAACTTGTCTTAATATGGTGAACGATGAAATTGATGGTCTCGATGCCAATTATCATCTTGAAAAAGAAAAGACTATGGGAACTAGTAATTTTTCAGATCACCCCAAATCTTTGGATGATATTATTGGTGAGAGAGGAACGAAGCGTCTACATGATGGTGAGCTCGAATCTGATAATAAAAAGTGTCGTACTGTTATTATTGAAAGTGAAGATGATGTTGATGCCACTGAAGATAAGCTAGATAGCACCCTAGAGGATCAATCCAAGGTTGAAGGCTTCTGTAAGACTCGTCCTGATTCTCTTCCTTCAGAGTGTTTGGATGAGAAATTTCACTGCACAATTTGTGATAAAGTGGCTCTTGAAGTCCACCCACACCCCCTGTTGAAGGTGATTATTTGTGGGGATTGCAATTGTTCAAGGGAAGAAAAGATACAAAAAAAGAACCTGGGTCTTGATTGTCCCCCGTCATACTGTGCATGGTGTGGAGGAGGCAGTGGGTTAGTTAACTGTAAACTATGTAAGATGTTATTCTGTAGCAGCTGTATAAAAAGGAATCTCGGTGTTGAATTCCTTACTGAAGCTCAGGCTACTGGTTGGGATTGTTGTTGCTGCCAACCAAATCTCCTGCAAAGTCTGACATTGCAACTAGAGAAAGCTATGGGATCTGCTGATATACTAGTTTCCAGTTCTAGTAGTGATTCAGATTCAGACGCAGATATTAATGTTACAATCAGCTCTAAGAGAAGGCGCAAAAAGAAGATTCGGAGGATACTTGATGATGCGGAATTAGGAGAGGAAACGAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGTCTAGAGTCTTTGCGAGTGCAGTTTTCCTCCTCATCAAACGAGATGAGCTCTGCTAGATGTATTGGGAATTTATCTGAAGGTGCAAGTGTTGAAGTTCTAGGCGATGCACAAGCAGGTTACATTGTGAATGTTGTGAGGGAGAAAGGGGAAGAAGCTGTCAGAATTCCTCCTAGCATCTCAGCCAAACTGAAGGCCCATCAGATTGCAGGAATAAGATTTATGTGGGAAAATATAATACAGTCAATAAGAAAAGTGAAGTCTGGGGATAAAGGACTTGGCTGTATTCTAGCTCATATGATGGGGCTCGGTAAAACTTTTCAGGTTATAGCTTTCTTGTACACTGCAATGAGAAGTATTGATTTGGGGTTAAGAACTGCACTTATAGTCACTCCAGTCAATGTGCTGCATAATTGGCGGCAAGAGTTTATCAAGTGGAGGCCTTCAGAGTTAAAGCCCCTAAGGGTCTTCATGTTGGAAGATGTATCAAGAGAGAGGAGGGCGGAATGGCTTGCAAAGTGGAGAATTAAAGGCGGTGTGTTTTTGATTGGCTATACTGCTTTCCGCAATTTGTCTTTTGGAAAGCATGTGAAAGATCGCCACATAGCCAAAGAAATTTGCCATGCTTTGCAGGATGGCCCGGACATTCTTGTGTGTGATGAAGCCCATATGATAAAAAATACAAAGGCTGACATAACTCAAGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCATTGACTGGATCACCCCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGAAACCGCTTCCAGAATCCTATAGAGAATGGTCAACACACTAATTCAACTCTGACTGACGTGAAAATTATGAACCAAAGGTCTCATATCCTATATGAACAGTTAAAAGGATTTGTGCAAAGAATGGACATGACTGTGGTGAAGAAGGATCTACCGCCAAAAACTGTCTTTGTGATAACTGTCAAGCTTTCCCTGTTACAGAGGAAATTGTACAAGAGGTTCCTTGATGTGCATGGGTTCACTAATGACAAGGCACATCATGAAAAGCTAAGAAAGAGAAGTTTTTTTGCTGGTTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGATAAGGACTACGTAAGACATGAAGAAGTCGTTGAGAATTTTCTAGTGGATGATTGCTCCAGTGATGAAAATTCTGATAATAATGCTGCCGGAGAGAAGATGAGGTATGCAAATGATTTGCAGCAAAGGAAAGATGAGAATGGCTTTTTCGTAAAGGGATGGTGGAATGAACTGCTTCATGAAAAAATTTATAAAGAGCCTGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACCATGAGTTCTGATGTGGGTGATAAGGTGTTGGTTTTTAGTCAGAGCATACCAACCCTCGACCTCATAGAACTTTACCTCTCCAGGATACCAAGGCGCAGCAAACGCGGGAAGTTTTGGAAAAAAGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAAAGGCTTGTTGAGAGATTTAATGAACCCTCAAATAGGCGGGTAAAATGCACTCTGATTTCAACCAGGGCGGGATCTTTGGGTATTAATCTTCATGCTGCTAACCGCGTTGTTATAATTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGGCAGACAAAGCCCGTGTTTGCATACCGATTGCTGGCTCATGGAACCATGGAAGAGAAAATATACAAGCGCCAGGTAACAAAGGAGGGGCTCGCTGCTAGAGTGGTTGATAGGCAACAGGTCCACAGGACCATATCCAAAGAAGAGATGCTACATCTGTTCGAGTTTGGTGATGATGAGAACCCTGAGACTTTAGCTGAACTTAATCAAGAAAATGGGGATGTTTCTGATCAAAATGACCCGAGTTCGGTTCGGCATTCACTGAAACATTCAAATGGCAGCAGTAATTCTGATAAGTTAATGGAAAGCTTACTTAGAAAGCATCATCCACAGTGGATTGCTAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTGTCAAAGGAGGAGAAAGACATGGCTTGGGAGGTGTACAGGAAATCTCTTGAATGGGAAGAAGTGCAGAGAGTACCAGTTGGTGAGCAAATGCCTCCTGAACAAAAGCCAGAAATGGTAAGTGCAAAACCCCAGGTACCAGTAGACCCCCTCAGCATGATCTCAAGTGCTAGGATAAGGAATCGTTTCATCATGCGCAAATGCACCAACCTTGCACACATGCTGACACTTAGAAGTCAGGGCATAAAACATGGTTGCAGTACAGTTTGTGGGGAATGCGCCCAGGAGATTAGCTGGGACGACTTGAAGATTAGAAAATAG 4410 0.422 MTLDLETVSHLACSTGFLVICKTAASEMEGKPEDEVVDIESASSGSFNDDSDDEGSLPSEIDDGVHLEEPLTEEEIEDLISELLEVESKAAEAQEALEEESLAKVESEVRQELQQILKGDDLETAVADEMAAFKEEWETALDGLETESANLLEQLDDAGIELPSLYKWIEREAPNGCRTEAWKQRNHWVGSQASAEIAVSIADAEKYLQVNRPVRRKHGKLLEEGASGFLQKKLCDETQEPVKKEMVGDWDLFNKIVSDGSSADVSFASKHWASVYLASTPQQAALMGLKFPGVNEVEEIDDIDGSSTDPFIAAAIANERELDLSEEQRRQFKKVKEEDDAIDDRKLQIRLKHRRHRKKSKQEGTCLNMVNDEIDGLDANYHLEKEKTMGTSNFSDHPKSLDDIIGERGTKRLHDGELESDNKKCRTVIIESEDDVDATEDKLDSTLEDQSKVEGFCKTRPDSLPSECLDEKFHCTICDKVALEVHPHPLLKVIICGDCNCSREEKIQKKNLGLDCPPSYCAWCGGGSGLVNCKLCKMLFCSSCIKRNLGVEFLTEAQATGWDCCCCQPNLLQSLTLQLEKAMGSADILVSSSSSDSDSDADINVTISSKRRRKKKIRRILDDAELGEETKKKIAIEKERQERLESLRVQFSSSSNEMSSARCIGNLSEGASVEVLGDAQAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHMMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRERRAEWLAKWRIKGGVFLIGYTAFRNLSFGKHVKDRHIAKEICHALQDGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVITVKLSLLQRKLYKRFLDVHGFTNDKAHHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKDYVRHEEVVENFLVDDCSSDENSDNNAAGEKMRYANDLQQRKDENGFFVKGWWNELLHEKIYKEPDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRSKRGKFWKKGKDWYRLDGRTESSERQRLVERFNEPSNRRVKCTLISTRAGSLGINLHAANRVVIIDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELNQENGDVSDQNDPSSVRHSLKHSNGSSNSDKLMESLLRKHHPQWIANYHEHESLLQENEEEKLSKEEKDMAWEVYRKSLEWEEVQRVPVGEQMPPEQKPEMVSAKPQVPVDPLSMISSARIRNRFIMRKCTNLAHMLTLRSQGIKHGCSTVCGECAQEISWDDLKIRK* 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1640 1469 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1114 1282 IPR001650 -
Dod06g1640 1469 Coils Coil 76 103 - -
Dod06g1640 1469 PANTHER RAD54-LIKE 53 1466 IPR044574 GO:0016887
Dod06g1640 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 960 IPR027417 -
Dod06g1640 1469 Coils Coil 1349 1369 - -
Dod06g1640 1469 Pfam SNF2-related domain 728 1030 IPR000330 GO:0005524|GO:0140658
Dod06g1640 1469 Gene3D - 677 960 IPR038718 -
Dod06g1640 1469 Coils Coil 134 161 - -
Dod06g1640 1469 CDD SF2_C_SNF 1104 1245 - -
Dod06g1640 1469 Gene3D - 971 1369 IPR027417 -
Dod06g1640 1469 SMART helicmild6 1137 1234 IPR001650 -
Dod06g1640 1469 MobiDBLite consensus disorder prediction 1305 1331 - -
Dod06g1640 1469 Pfam Helicase conserved C-terminal domain 1110 1234 IPR001650 -
Dod06g1640 1469 ProSiteProfiles ADD domain profile. 463 595 IPR025766 -
Dod06g1640 1469 PANTHER RAD54-LIKE 53 1466 - -
Dod06g1640 1469 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 728 911 IPR014001 -
Dod06g1640 1469 MobiDBLite consensus disorder prediction 42 61 - -
Dod06g1640 1469 CDD ADDz_ATRX 471 569 - -
Dod06g1640 1469 SMART ultradead3 702 923 IPR014001 -
Dod06g1640 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1300 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1640 Dod-Chr6 22214078 22244919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1640 770 1287 RAD5 or RAD16-like Gene Family AT5G22750 24.211 1.08e-30 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod06g1640 SNF2_N 2e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1640 K10779 - gmx:100794911 2258.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1640 06 22214078 22244919 Dod06g1640 06 22214078 22244919 ECH