Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1636 ATGGCGCCTAATCCAAGAGTTACTAATGCCTATAATGTTATGAGGACCTTAGGAATTCCTGATGACGAGGTGAGGCCCATCTTGAAAAAGTTGCTAATGGTGTATGATAGAAGGTGGGAACTTATTGAAGAAGACAATTATCGGACACTTGTGGATGCATATTTTCAGTTAAAGGAAGATAAGCAAGCAGAAGGTAAGAGGAAAACTCCAGTCAGCTATCATGATGAAGAAAGAGCAACACAGAAACTGATCTTGATAGATGGAGATGACCAGGTCTCATCAGCTGACAATTCTAGACACATTTTGTCTGTAGAAGACACTCAAATACCTCCCGAGACTTCTAAACAGGAAATTGTTAAGCCATCTCGGTCTCAACCATCAACGGGAGATATGAATCCCACAGCCAGTTCACAAGCATTGCAGACGAGGTTGAGTGAGGTGGAAATTATCTCAAATTTACCTTGCATGGATGCCAGAGATAGGAAACTGTTTCCTGAGAAAGCAACATCTGCAGGGCATTCTGAAGATTGGAATGGTCAATCTAGCTGTCCTCGTATGCAGAGGAAAAATATGCTAAGTGACCATTATCATCAGGAGATTATAACGCCAAAAAATAAGAAACCGAAGTTACATCTTGGACCTGTTTCATCATGTTTCAGAGGCCCATGTGATGCTTCATATGGAAATCCCCGTTTCAAATCTCTCTCAGATTTTTATCCGGATATCCACAAGAAATATGATAACCCAGCATCCAATAGTAACACCAGAACTTGTAAGGGTAATATTGATATTGCCTCTTCACCTTTGGGAGAAGTTAAAATTTCTTTAAACTGTGATGCTGCCTTGGGACAATCGAACTTTCGTATTCCTAATTTGGATGCTGTTATGAAGTCCATGGAGGAAAAGTATCAGAGATTATGGAGGACTGCTGAGCCTCAACTCTCTATGGTGAAGTTGTTAGATGATTTATGTCGAAGTTATTTGAAGTTGGGCCTGAATTTAAATCGAAAGGGGTCAAAGGCCAGTAATGCCAATTCACACAACATGACACTCATGCCACAAGCAGCTGGTGCTCATGATGAAAATAATTCTATTCACTTTCTCAATGACATAACAAAAGCTTCAGAAAATGTTAAAATTTCATTATTAGATGAAACTGGAAATGAGGACTTGCCAAAGTTTTGTTACATACCAAATAATATCATATATCAAAGTGCTAATGTGAATATTTCACTTGCTCGGATTGCGGATGAGGGTTGCTGTTCGGATTGTTCAGGCGACTGCCTTTCCTTGTCATTTCCTTGTGCATGTGCCCAAGAAACTGGTGGAGAGTTTGCTTATACTCCACAAGGTTTGCTGAAAGAAGAATTTCTAGCAGTTTGTATGTCTATGATAATAGAACCTCAAGATCATCATTTTGTGTATTGTCAAGAATGCCCACTGGAGAGGTCTAAGAATGAGAACATGACTGAACAATGCAAGGGGCATCTGGTTAGAAAGTTTATAAAGGAATGTTGGAGGAAATGTGGATGTGACATGCAGTGCGGAAATCGGGTAGTGCAGCGAGGTTTAAGATGTAAATTGCAGGTGTTCTTGACTCATGAAGGGAAGGGCTGGGGCCTTAGAACACTAGAAGATTTGCCCAAGGGATGCTTTGTATGTGAATATGTTGGGGAAATATTAACCAATACTGAATTATATGAAAGGGTTTTGCAGAAAAGCGGCAATGACCGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCTGAAGGGGTGTTGAAGGACGAGGAGGCACTATGCTTAGATGCAACATACAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCTGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACTCCTGATCGCCACTATTATCATATTGCTCTCTTTACGAACAGAAAAGTTAAAGCATATGAGGAGTTGACATGGGATTATGGAATTGACTTTGACGATCATGACCATCCTATTAAAGCATTTCATTGTTGTTGTGGAAGTGCCTTCTGCCGCGATAAGAAACAGAAAGGAACTAGATTATTGAAAACTAAAAAACACAGGTAG 2100 0.401 MAPNPRVTNAYNVMRTLGIPDDEVRPILKKLLMVYDRRWELIEEDNYRTLVDAYFQLKEDKQAEGKRKTPVSYHDEERATQKLILIDGDDQVSSADNSRHILSVEDTQIPPETSKQEIVKPSRSQPSTGDMNPTASSQALQTRLSEVEIISNLPCMDARDRKLFPEKATSAGHSEDWNGQSSCPRMQRKNMLSDHYHQEIITPKNKKPKLHLGPVSSCFRGPCDASYGNPRFKSLSDFYPDIHKKYDNPASNSNTRTCKGNIDIASSPLGEVKISLNCDAALGQSNFRIPNLDAVMKSMEEKYQRLWRTAEPQLSMVKLLDDLCRSYLKLGLNLNRKGSKASNANSHNMTLMPQAAGAHDENNSIHFLNDITKASENVKISLLDETGNEDLPKFCYIPNNIIYQSANVNISLARIADEGCCSDCSGDCLSLSFPCACAQETGGEFAYTPQGLLKEEFLAVCMSMIIEPQDHHFVYCQECPLERSKNENMTEQCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTHEGKGWGLRTLEDLPKGCFVCEYVGEILTNTELYERVLQKSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHIALFTNRKVKAYEELTWDYGIDFDDHDHPIKAFHCCCGSAFCRDKKQKGTRLLKTKKHR* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1636 699 ProSiteProfiles Pre-SET domain profile. 420 523 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod06g1636 699 Pfam SET domain 538 660 IPR001214 GO:0005515
Dod06g1636 699 Gene3D SET domain 371 685 IPR046341 -
Dod06g1636 699 Pfam Pre-SET motif 372 518 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod06g1636 699 SMART preset_2 368 510 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod06g1636 699 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 690 - -
Dod06g1636 699 Gene3D - 1 60 IPR043017 -
Dod06g1636 699 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 698 IPR025776 -
Dod06g1636 699 MobiDBLite consensus disorder prediction 101 141 - -
Dod06g1636 699 SMART set_7 526 666 IPR001214 GO:0005515
Dod06g1636 699 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Dod06g1636 699 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 690 - -
Dod06g1636 699 CDD SET_SETDB-like 392 660 - -
Dod06g1636 699 ProSiteProfiles SET domain profile. 526 660 IPR001214 GO:0005515
Dod06g1636 699 SUPERFAMILY SET domain 378 683 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1636 Dod-Chr6 22174219 22184544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1636 502 683 C2H2 Transcription Factor Family AT2G23740 42.246 5.22e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod06g1636 Pre-SET 7.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1636 - - gsj:114402909 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3520 01 76476738 76486598 Dod06g1636 06 22174219 22184544 PCT
Dod06g1636 06 22174219 22184544 Dod01g2573 01 64928612 64937640 PCT