Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1627 ATGGAGGTGGCACTGCCAAGGCATGGGTGCAACATGGCTTGTGGGGGTGGGGGGCGCTATAGCGTCGGTGAACATCAACAGCAGCGGTGGTCTGAGAGTGGCGGTGGCGTAGGGCCGACAAGGGGGGCGAGGCAAAAAGCTTTGATTCGTTTAATTTCATGGCGACATCGTCTTCCTCGGCATCGCAATCGCATTTCACCTATTCCGACGCCTCCTCCTACTTCCCCGTCCCCTTCCACCTTCAGCAGCCCGCCGCTGTGGCGAACTACGCCGCCGCACCGTACGCTGCGGCGCCAGCGGTGCAAATCGCCGCTGCCTCCTGTCATCGGTCCCGTCGCTCCGGCGCCGGTGGCTAGCGTTTACTCCGTGCCGCAATATCCGGCACAGCAGTTATTTGAGAGGGACGCGCTGACAATAACGCCGGAGGCGTTGGAGAGTGTGAAGGCGGCGATAGCGAGCAGCGAGGCGGAGCACAGAGCGGAGGCGAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGGTCAAACCTGGGAGGATCCTATTCTTGCTGAGTGGCCTGAAGATGACTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGATGATGTTCTTACAAAAGCATTTTCTCGGTTCCCTTCCTTTAACATGGCACGAGTTGTCAGAGATAAGCGGACTGGAAAAACAAAGGGTTATGGATTTGTAAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATTAAACTACGCAAGAGTAAGTGGAAGGAGAGGACTGATTATGAGGCCCTAGAGAAACAAAAGCTCTCTGGTGCTATTTTGGCGTTAGAGCCGATAATGGATCGGCGATGGCGTGCATACGGTATGCTTGTGCCTTGTAGCGATCTTGCATCTGGTTTCACATTCGCCTAA 948 0.5401 MEVALPRHGCNMACGGGGRYSVGEHQQQRWSESGGGVGPTRGARQKALIRLISWRHRLPRHRNRISPIPTPPPTSPSPSTFSSPPLWRTTPPHRTLRRQRCKSPLPPVIGPVAPAPVASVYSVPQYPAQQLFERDALTITPEALESVKAAIASSEAEHRAEAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKLSGAILALEPIMDRRWRAYGMLVPCSDLASGFTFA* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1627 315 SMART rrm1_1 190 263 IPR000504 GO:0003723
Dod06g1627 315 CDD RRM_RBM42 183 265 IPR034215 -
Dod06g1627 315 Gene3D - 141 278 IPR012677 -
Dod06g1627 315 PANTHER RNA-BINDING PROTEIN 42-LIKE 103 280 - -
Dod06g1627 315 SUPERFAMILY RNA-binding domain, RBD 173 269 IPR035979 GO:0003676
Dod06g1627 315 MobiDBLite consensus disorder prediction 60 105 - -
Dod06g1627 315 MobiDBLite consensus disorder prediction 65 80 - -
Dod06g1627 315 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 103 280 - -
Dod06g1627 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 261 IPR000504 GO:0003723
Dod06g1627 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1627 Dod-Chr6 22023547 22030051 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1627 191 315 Eukaryotic Initiation Factors Gene Family AT1G71770 25.676 3.82e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1627 K25079 - gmx:100807693 296.589