Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1604 ATGAACAAAGAAGCAGAAGGGAAAGGAGAGGAAGCAGTGGGTGTGTTGGCCAAAAGGCCACGCTCGAGAAAAGGTTGCATGAAAGGGAAAGGTGGACCCGAGAATGCTTTATGCACATACAGGGGTGTGAGGCAGAGGACTTGGGGAAAATGGGTTGCTGAAATTCGAGAGCCCAAACGTGGCGCTAGGCTTTGGCTTGGCACATTCAAAACTTCAACTGAAGCTGCAATTGCATATGATGATGCAGCAAGAAGGCTATACGGTGCATCAGCAAAACTCAATTTGCCACCACCACCTGCACCAATAGCAGCAACTTCCTCTCCGACAAGTAACGTTGGGATTCATGATCAGGATTCGATTATTCCTAGAGAGCCCGCTTCTTCCAACGAGGCTTCTAGTAGTAATACTAATAATACTGTGCTTGTTGGAGAAGTGAGCAATAAAGGGGTGTTCTGGGAGAGTAACAGTGGTGACTTCATTAGGAATGATTTTCTGGAACTGAGTGATGCATGGGGGCAGGAGCTTAAGGATTGGGATCGATTATTAGAGATTTAA 555 0.4649 MNKEAEGKGEEAVGVLAKRPRSRKGCMKGKGGPENALCTYRGVRQRTWGKWVAEIREPKRGARLWLGTFKTSTEAAIAYDDAARRLYGASAKLNLPPPPAPIAATSSPTSNVGIHDQDSIIPREPASSNEASSSNTNNTVLVGEVSNKGVFWESNSGDFIRNDFLELSDAWGQELKDWDRLLEI* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1604 184 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Dod06g1604 184 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Dod06g1604 184 MobiDBLite consensus disorder prediction 104 135 - -
Dod06g1604 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 136 - -
Dod06g1604 184 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Dod06g1604 184 MobiDBLite consensus disorder prediction 1 18 - -
Dod06g1604 184 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Dod06g1604 184 MobiDBLite consensus disorder prediction 105 135 - -
Dod06g1604 184 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Dod06g1604 184 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Dod06g1604 184 MobiDBLite consensus disorder prediction 1 31 - -
Dod06g1604 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 136 - -
Dod06g1604 184 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Dod06g1604 184 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1604 Dod-Chr6 21740088 21740824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1604 21 98 AP2-EREBP Transcription Factor Family AT5G18450 82.051 3.01e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod06g1604 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1604 - - fve:101298905 166.007