Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1596 ATGCTCAAGTACTTAGCTGCGGTTTACAGTCACCTGAAATGGGCATTGGATTTCCTTCTATACTATCCCTTCTACAAGCTCTACGATTCTCGTATGCCTACAATTGGAGAAGATATGAGTATATGCCGCTTTCAATCCACCCCTGGCTCAGAGGAACATGCAGATTGTTGTGTGTGTCTATGCAAAATTGATGTAGGAGAAGAGATTAGAGTGCTGAGGGGTGACCATGTCTTCCACAAAGAGTGTTTGGACCGATGGGTTGGTTTCACGCATGCTACTTGCCCCCTTTGCAGACAATCAGCGGGTCCAAGGAGGGATATCACTGTGCTTGGAGCTGAAGTTCTATTCTTCGAGTTTTGTTCATCAATCCGCAATGATGACCGTAACACGTGGTGGCTACGGTGA 405 0.4642 MLKYLAAVYSHLKWALDFLLYYPFYKLYDSRMPTIGEDMSICRFQSTPGSEEHADCCVCLCKIDVGEEIRVLRGDHVFHKECLDRWVGFTHATCPLCRQSAGPRRDITVLGAEVLFFEFCSSIRNDDRNTWWLR* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1596 134 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 3 126 - -
Dod06g1596 134 SMART ring_2 56 97 IPR001841 -
Dod06g1596 134 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 126 - -
Dod06g1596 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 104 IPR013083 -
Dod06g1596 134 Pfam Ring finger domain 55 98 IPR001841 -
Dod06g1596 134 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Dod06g1596 134 SUPERFAMILY RING/U-box 55 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1596 Dod-Chr6 21639354 21640106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1596 37 126 C3H Transcription Factor Family AT4G28890 40.217 1.52e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1596 K16282 - sind:105156745 132.494