Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1594 ATGTCCACCGACAAGGCACTTGTGTTGAAGGACAAGCTGCGGGAGCTGGTTAAGGCCATCGTGGAGAGCGATGACTACACAGAGAATGCTGCCAACGAGGCTATCACCACTCTTTCTGCTCTCAAGAACTTGAAAGGCAACAGCACCTCTTTATCTCATGAGTTCTATCATGTTCCTGTTCCTCCCCAGTTTCTATGCCCCATTTCAGGACAACTGATGGCAGAACCTGTAATCTTGACCAATGGAAAGACTTATGATCGGCAATCCATTGAAATGTGGCTGAAAGAAGTCCAAAGAACATGCCCTGAGACCCACCAAGTCCTCTCACATTCTATCTTCACTCCTAATTCCTTGGTCAAAGGCTTGATTTCCCAGTGGTGTAAAGAGCATGAAATTGAGCCACCAAAACCTGCTGAGGAAGACACAGAAGAAGAAGAAGAAGCAATAACTGATGAACATGAAAACCGATTGCATTCATTGCTCGACAATTTGACATTGTCTGTGTCTCACCAAACAGAAGCAGCAAAAGAGCTTCGGCAGCTGACAAAGCAAATGCCTGCATTCCGAACCCTCTTCAAGAAACCAGATGTGATTCAAAAGCTGCTAAGCCCACTATCATCCGGAACGGCTCACGTTGATCCACAGCTCCATGAGGACTTGATCACAACAATTCTCAACATCTCAATTCATGATGGTAACAAGAGAGTGTTTGCTCAGGATGAAAGACTCATTCCCCTCCTCATTGATTCCATAAGATGTGGAACAATGCAAACAAGAAGCAATGCTGCGGCAGCTATCTTCTCGTTATCAGCACTTGATCAAAACAAGCACATCATTGGAAAATCCGGGGCTATCAAATACTTGGTTGATCTTTTAGAAGAGGGAAACCAATCAGCTATGAAAGATGCTGCTTCAGCAATATTCAGCCTATGTATTTCACATGAGAATAAGGTGAGGACTGTAAGAGAAGGTGCAGTTCAGGTTATTCTACACAAGATCATGGACCGTGTTCTAGTTGATGAGTTGTTGGCTATACTTGCATTGCTCTCTACACATCACAATGCTGTTGAAGCATTGTGTAACCATGGTGCTGTGCACTTCTTGCTTGGTTTTATAAGGGACTCGAGCACCTCAGAACGCAGCAAGGAGAATTGTGCTGCGATCCTATACACAATATGTTGCAGAGACAGGGAAAAAAGGAAGGAAATTAGTGAAGATGAAATAGTTAATGATTCACTGAAGAAACTTGCGGAATGTGGCACTTCAAGGGCCAAGAGGAAGGCTAATGATATTCTTCAGAAGCTCAAAATGACCATGTTAAAGCACAATAGTTAG 1335 0.436 MSTDKALVLKDKLRELVKAIVESDDYTENAANEAITTLSALKNLKGNSTSLSHEFYHVPVPPQFLCPISGQLMAEPVILTNGKTYDRQSIEMWLKEVQRTCPETHQVLSHSIFTPNSLVKGLISQWCKEHEIEPPKPAEEDTEEEEEAITDEHENRLHSLLDNLTLSVSHQTEAAKELRQLTKQMPAFRTLFKKPDVIQKLLSPLSSGTAHVDPQLHEDLITTILNISIHDGNKRVFAQDERLIPLLIDSIRCGTMQTRSNAAAAIFSLSALDQNKHIIGKSGAIKYLVDLLEEGNQSAMKDAASAIFSLCISHENKVRTVREGAVQVILHKIMDRVLVDELLAILALLSTHHNAVEALCNHGAVHFLLGFIRDSSTSERSKENCAAILYTICCRDREKRKEISEDEIVNDSLKKLAECGTSRAKRKANDILQKLKMTMLKHNS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1594 444 SUPERFAMILY ARM repeat 157 435 IPR016024 -
Dod06g1594 444 Gene3D - 147 438 IPR011989 -
Dod06g1594 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 146 IPR013083 -
Dod06g1594 444 SUPERFAMILY RING/U-box 53 136 - -
Dod06g1594 444 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Dod06g1594 444 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 4 440 - -
Dod06g1594 444 PANTHER U BOX DOMAIN-CONTAINING 4 440 - -
Dod06g1594 444 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Dod06g1594 444 CDD RING-Ubox_PUB 64 106 IPR045210 -
Dod06g1594 444 Pfam U-box domain 60 131 IPR003613 GO:0004842|GO:0016567
Dod06g1594 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1594 Dod-Chr6 21608791 21611125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1594 122 439 U-box Gene Family AT3G07360 51.090 5.00e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1594 - - gmx:100806132 498.049